Species specific scripts for ecoli
Project description
bps_fbi_sp_ecoli
Install
pip install bps_fbi_sp_ecoli
How to use
Determines the serotype and virulence in ecoli through kmer alignment
! FBI_run_bifrostecolipostkma -h
#! FBI_run_bifrostecolipostkma --input input/231116_CUSTOM_SSIFBI_ECOLI --sample_sheet sample_sheet.xlsx --output output/231116_CUSTOM_SSIFBI_ECOLI --command_file output/231116_CUSTOM_SSIFBI_ECOLI/run_bifrostecolipostkma.tsv --execute
! FBI_run_qcecolisummary -h
#! FBI_run_bifrostecolipostkma --input input/231116_CUSTOM_SSIFBI_ECOLI --sample_sheet sample_sheet.xlsx --output output/231116_CUSTOM_SSIFBI_ECOLI --command_file output/231116_CUSTOM_SSIFBI_ECOLI/run_bifrostecolipostkma.tsv --execute
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bps_fbi_sp_ecoli-0.0.5.tar.gz
(16.3 kB
view details)
Built Distribution
File details
Details for the file bps_fbi_sp_ecoli-0.0.5.tar.gz.
File metadata
- Download URL: bps_fbi_sp_ecoli-0.0.5.tar.gz
- Upload date:
- Size: 16.3 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.0.0 CPython/3.11.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | dd3a39e93b4ea85b9cae70f1a1a8f4e1aecd33d1e50b43075cabd2f6c9b9c99c |
|
| MD5 | f21eb45d12b56c6644cbf10a26eeeb25 |
|
| BLAKE2b-256 | 6f18c1849e12265e379d9ec05fbdffdf265e3d7cc55cab54b7f3323baf5ad04a |
File details
Details for the file bps_fbi_sp_ecoli-0.0.5-py3-none-any.whl.
File metadata
- Download URL: bps_fbi_sp_ecoli-0.0.5-py3-none-any.whl
- Upload date:
- Size: 21.0 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.0.0 CPython/3.11.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 304144d9f1ddf83fc9f4add732f7cf8c1c99f40f91ebdf50cbf1d657bd3693b3 |
|
| MD5 | 245b02c9790cfee7ca4b0de41a60756d |
|
| BLAKE2b-256 | 53b4baa61144641eac3779fed122d8bada4c92d849a0eca5bf80c813c10396d1 |
