brain-observatory-utilities 0.5.0

Utilities for analyzing, manipulating and visualizing data for Brain Observatory projects

brain_observatory_utilities

Tools for analysis, manipulation and visualization of Brain Observatory data availible via the AllenSDK.

Functions in this repository depend on the AllenSDK https://github.com/AllenInstitute/AllenSDK

Installation

Set up a dedicated conda environment:

conda create -n brain_observatory_utilities python=3.8 

Activate the new environment:

conda activate brain_observatory_utilities

Make the new environment visible in the Jupyter

pip install ipykernel
python -m ipykernel install --user --name brain_observatory_utilities

Install brain_observatory_utilities

if you intend to edit the source code, install in developer mode:

git clone https://github.com/AllenInstitute/brain_observatory_utilities.git
cd brain_observatory_utilities
pip install -e .

Level of Support

We are planning on occasional updating these tools and repo structure with no fixed schedule. Community involvement is encouraged through both issues and pull requests.