brain-wiki

One long-term memory for all your AI agents, kept as plain Markdown that you own.

brain-wiki gives Claude Code, Codex and the ChatGPT desktop app, Antigravity, OpenClaw, Cursor, and any MCP client one shared brain: a folder of Markdown notes they search before answering, cite when they rely on it, and keep up to date as they work. It runs on your machine, needs no server or API keys, and the brain opens in Obsidian.

Getting started · Connecting agents · User guide · Design · Changelog

Why brain-wiki

• Plain files you own. A brain is a folder of Markdown notes you can read, edit, diff, back up, and sync like any other folder. Bring an existing Obsidian vault as it is.
• Every agent, one brain. What you teach one agent, the others know. A short instruction block tells each agent the brain is there, and a briefing gives it your standing rules and what the brain holds.
• Answers that know what changed. Notes connect through typed relations (part_of, depends_on, conflicts_with, supersedes, related_to). When a note has been replaced or contradicted, search returns the note that qualifies it together with it.
• Safe changes. Agents log what they learn to an inbox and fold it into notes through small validated operations. When they correct a note directly, brain check refuses lost or reworded facts before recording it. Every change is recorded, committed to git if the brain is a repository, and can be undone.
• Your agent does the thinking. Consolidation and harvesting run inside the agent you already use. brain-wiki makes no network calls of its own.

Get started

brain-wiki needs Python 3.11 or newer with SQLite FTS5, which the python.org, uv, Homebrew, and most Linux builds include, and uv.

1. Add brain-wiki to your agent.

No plugin yet, or an agent not listed? Ask any agent that can run commands:

Install brain-wiki with uv tool install brain-wiki, then run brain setup --guide and follow it.

2. Ask your agent to set it up.

Set up brain-wiki.

The brain-setup skill (or the guide brain setup --guide prints, which holds the same steps) explains each choice, lets you decide, and shows every change before making it:

• where your brain lives (a new folder, or an Obsidian vault adopted in place) and whether to track it with git;
• which other agents on this machine to connect;
• what each agent may do: log what it learns and correct notes (on by default), consolidate the inbox, and propose rules that you confirm;
• whether to turn past sessions into episodes (harvest).

3. Use it.

Remember that Lumen keeps attachments next to their notes, because Obsidian expects relative paths.

What did we decide about attachments?

Consolidate my brain.

From a terminal

uv tool install brain-wiki      # or: pipx install brain-wiki
brain setup                     # step by step: create a brain, connect your agents, harvest
brain log "Lumen keeps attachments next to their notes; Obsidian expects relative paths."
brain search "attachments"
brain viz                       # a local 3D map of the brain

Or do the steps yourself: brain doctor (checks SQLite, your brains, and the agents on this machine), brain init ~/brains/personal --name personal --git, and brain connect claude-code (or codex, antigravity, openclaw, cursor; try --dry-run first).

Keep brains outside your code repositories. Agents may log and correct notes by default; brain setup asks whether each app may also consolidate and propose rules, or grant it yourself:

brain agents grant claude-code consolidate propose_rules

Marketplace installs start the server with uvx. With the command installed, brain connect starts it at once, and --uninstall reverses it.

How it works

 agents ──log · harvest────────────────────────► inbox/episodes/
  │  ▲                                                │
  │  │                                                │ consolidate, when you ask:
  │  │                                                │ your agent proposes ops,
  │  │                                                │ brain-wiki validates them
  │  │                                                ▼
  │  └── orient · search · read · neighbors ─── topics/**/*.md ◄── you, in Obsidian
  │      (with the notes that supersede or conflict)      ▲
  └── edit, then brain check ─────────────────────────────┘

• Agents write in two ways. They log what they learn as episodes in inbox/episodes/, and brain harvest adds more from their past sessions. To fix a note, such as a person's new role, an agent edits the file and runs brain check, which refuses deleted or reworded facts.
• Consolidation runs in your agent, when you ask. brain-wiki packages the pending episodes, your agent proposes small operations (add a claim, supersede one, link two notes, create a note), and brain-wiki validates and applies them, then moves the episodes to archive/episodes/. brain-wiki never consolidates on its own.
• Every change is a run. Consolidation and checked edits are locked, validated, logged in log.md, committed to git if the brain is a repository, and reversible with brain undo.
• The brain is a folder: topics/ holds curated notes, one folder per topic and nested to any depth, each with a hub (index.md); rules.md holds standing rules that only you add; AGENTS.md tells agents that only read files how to use the brain.
• The index is a SQLite FTS5 database outside the brain, kept current as files change and rebuilt from the brain when it is missing.
• Agents connect through an MCP server with thirteen tools, a plugin with three skills, and an instruction block that tells them when to use the brain.

Documentation

Status

brain-wiki is alpha software at its first release. Its known limitations:

• There are no privacy levels inside a brain: every agent that may use a brain reads all of it. Keep separate parts of your life in separate brains.
• Maintenance runs when you ask your agent; there is no scheduler.
• Chat apps that need a remote MCP server (ChatGPT, claude.ai, the Gemini app) are not supported yet.

Plans for each are in docs/proposals.

Contributing

git clone https://github.com/brain-wiki/brain-wiki.git
cd brain-wiki
uv sync
uv run scripts/check.py         # everything CI runs

See CONTRIBUTING.md. The visualizer's source is in brain-wiki-viz.

Security

Report vulnerabilities privately, as described in SECURITY.md.

License

Apache License 2.0. The bundled visualizer's third-party licenses are in THIRD_PARTY_NOTICES.txt.