niftyreg_preprocessor
does the following
- co-registration
- atlas registration
- transformation
- skullstripping in brats-space
- apply masking
- result: 4niftis, skullstripped brats-space -> save to path
atlas
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2915788/
installation:
pip install -e "git+https://github.com/neuronflow/BrainLes.git@main#egg=HD_BET&subdirectory=preprocessing/brainles_preprocessing/brain_extraction/HD_BET"
/home/florian/flow/BrainLesion/BrainLes/preprocessing
1 maintainer
Metadata
1 maintainer
Release files for brainles-preprocessing 0.0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| BrainLes_preprocessing-0.0.2.tar.gz | 16.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| BrainLes_preprocessing-0.0.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 32.9 kB
Release files / BrainLes_preprocessing-0.0.2.tar.gz
| Download URL | BrainLes_preprocessing-0.0.2.tar.gz |
|---|---|
| Size | 16.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
6cce6568a4afa8133670dec5d8e6611b343cc8e023d1cf07cbf6f28e233ebcc8
|
|
BLAKE2b-256 checksum How to use checksums |
5aa50ee9903a2026b7cebb45c06024b262e21c4bba1f216ae1d1dc03e718a1dc
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.10.12
|
Release files / BrainLes_preprocessing-0.0.2-py3-none-any.whl
| Download URL | BrainLes_preprocessing-0.0.2-py3-none-any.whl |
|---|---|
| Size | 16.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
3636a2ef951039df8f969ca829fee9ff5defaa07e33525d88d9df704a2433a73
|
|
BLAKE2b-256 checksum How to use checksums |
199022c8ad37140ae16f7cabdea7c08e0554394a256c6a74938293f46dee02ea
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.10.12
|
