TODO.
Project description
niftyreg_preprocessor
does the following
- co-registration
- atlas registration
- transformation
- skullstripping in brats-space
- apply masking
- result: 4niftis, skullstripped brats-space -> save to path
atlas
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2915788/
installation:
pip install -e "git+https://github.com/neuronflow/BrainLes.git@main#egg=HD_BET&subdirectory=preprocessing/brainles_preprocessing/brain_extraction/HD_BET"
/home/florian/flow/BrainLesion/BrainLes/preprocessing
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Close
Hashes for BrainLes_preprocessing-0.0.2.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 6cce6568a4afa8133670dec5d8e6611b343cc8e023d1cf07cbf6f28e233ebcc8 |
|
MD5 | 770aa2a7a8da2e679a834ceb093eb175 |
|
BLAKE2b-256 | 5aa50ee9903a2026b7cebb45c06024b262e21c4bba1f216ae1d1dc03e718a1dc |
Close
Hashes for BrainLes_preprocessing-0.0.2-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 3636a2ef951039df8f969ca829fee9ff5defaa07e33525d88d9df704a2433a73 |
|
MD5 | df1c5dd755e05558e72a00428000ff8b |
|
BLAKE2b-256 | 199022c8ad37140ae16f7cabdea7c08e0554394a256c6a74938293f46dee02ea |