Skip to main content

Visualisation and exploration of brain atlases and other anatomical data

Project description

Brainrender

Python Version PyPI tests codecov License: GPL v3 Code style: black

brainrender is a python package for the visualization of three dimensional neuro-anatomical data. It can be used to render data from publicly available data set (e.g. Allen Brain atlas) as well as user generated experimental data. The goal of brainrender is to facilitate the exploration and dissemination of neuro-anatomical data by providing a user-friendly platform to create high-quality 3D renderings.

Docs

:books: brainrender docs

📖 brainrender paper

Installation

You can install brainrender with:

pip install brainrender

Contributing

Contributions to brainrender are more than welcome. Please see the developers guide. Note that some tests are only run locally, by specifying --runslow --runlocal in pytest.

Citing brainrender

If you use brainrender in your work, please cite:

Claudi, F., Tyson, A. L., Petrucco, L., Margrie, T.W., Portugues, R.,  Branco, T. (2021) "Visualizing anatomically registered data with Brainrender&quot; <i>eLife</i> 2021;10:e65751 [doi.org/10.7554/eLife.65751](https://doi.org/10.7554/eLife.65751)

Examples

The following images were created for the publication of the brainrender paper. References to the original data being visualised can also be found in the paper.

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

brainrender-2.1.6.tar.gz (1.6 MB view hashes)

Uploaded source

Built Distribution

brainrender-2.1.6-py3-none-any.whl (1.6 MB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page