brainsurfy

Simple surface plots in Python based on ggseg parcellations.

import matplotlib.pyplot as plt

from brainsurfy import fetch_atlas_data, simulate_data, plot_surf

atlas_data = fetch_atlas_data('schaefer7_400')
sim_data = simulate_data(atlas_data)

plot_surf(atlas_data, sim_data, cmap=plt.cm.viridis, cbar=True)

Output:

Installation

brainsurfy is meant to be used with Python 3.9 or above, and has been tested on Python 3.9-3.12.

Dependencies

• NumPy
• Pandas
• matplotlib
• seaborn

User installation

To install brainsurfy, run this command in your terminal:

pip install brainsurfy

This is the preferred method to install brainsurfy, as it will always install the most recent stable release.

If you don’t have pip installed, this Python installation guide can guide you through the process.

to-do:

• a lot of things...
• look into 3d surface plots
• docs (once there is more stuff)
• form into package and upload to pypi

======= History

0.0.1 (2024-03-15)

• First release on PyPI.

0.0.2 (2024-03-15)

• Fix fetching atlases function.

0.0.3 (2024-03-15)

• More fixes including actually including the atlases folder (dumb mistake...)