brighteyes-mcs-file 0.1.2

Utilities for reading and calibrating BrightEyes MCS HDF5 files.

BrightEyes MCS File

Python utilities for reading and calibrating BrightEyes MCS HDF5 files.

This package is structured with a src/ layout so it can be published on PyPI as brighteyes-mcs-file and imported as brighteyes_mcs_file.

Install for Development

pip install -e .[fit]

Basic Usage

from brighteyes_mcs_file import (
    Alignment,
    calibrate_h5_file,
    metadata_load,
    plot_calibration_lifetime_summary,
    show_h5_structure_html,
    sum_channel_applying_shifts,
)

metadata = metadata_load("data.h5")
output_path = calibrate_h5_file("data.h5", "reference.h5")
show_h5_structure_html(output_path)

The package includes a local mcs module, so calibration no longer imports brighteyes_ism.dataio.mcs.

The HDF5 calibration workflow notebook is in examples/Calibrate_h5_file_Workflow.ipynb. Install notebook-only helpers with pip install -e .[notebook].