Ultra-fast Rust-powered statistics and time-series utilities for Python.
Project description
💥 bunker-stats
A Rust powered statistical toolkit with a Python API and pandas Styler integration.
🔧 Overview
bunker-stats is a hybrid Rust and Python library providing:
- Fast statistical primitives\
- Rolling window analytics\
- Distribution tools\
- pandas Styler visualizations
Everything runs on Rust for speed and correctness.
🧭 Project Philosophy and Status
v0.1 is an intentional early release.
This library focuses on correctness, clean APIs, and solid statistical foundations.
🔮 Future Focus
- Performance tuning (SIMD, fused loops, BLAS ops)\
- Smarter rolling window engines\
- More visualization helpers\
- NaN safe variants\
- Multi column Rust kernels\
- Faster correlation matrix engine
🚀 Features
Core statistics (Rust)
- Mean, variance, standard deviation\
- Sample vs population versions\
- Z scores\
- MAD\
- Percentiles and quantiles\
- IQR and Tukey fences\
- Covariance, correlation\
- Welford one pass algorithms\
- EWMA
Rolling analytics
- Rolling mean, std, z score\
- Rolling covariance, correlation\
- Planned fused pipelines
Distribution tools
- ECDF\
- Gaussian KDE\
- Quantile binning\
- Winsorization
Transforms
- Robust scaling using Median and MAD\
- diff, pct_change, cumsum, cummean
pandas Styler
demean_style(df, column)\zscore_style(df, column, threshold=...)\iqr_outlier_style(df, column)\corr_heatmap(df)\robust_scale_column(df, column)
🧩 API Map (v0.2.7): Functions + Module Locations
bunker-stats exposes SciPy-style numerical routines from Rust via Python bindings. Internally, the crate is organized into two main Rust modules:
src/lib.rs— public Python-facing wrappers + core vector opssrc/infer/*— inference / hypothesis tests (SciPy parity focus)src/kernels/*— internal kernels used by wrappers (rolling, quantiles, robust, matrices, etc.)
Python calling style: functions are imported from
bunker_stats(or whichever top-level module you expose in__init__.py). Below, “Location” refers to the Rust source module.
bunker-stats v0.2.8 — Release Notes
🔁 Sandbox Integration (Major Internal Milestone)
v0.2.8 integrates nearly all functionality from the sandbox into the main library, consolidating experimental work into a single, coherent Rust core with a stable Python API.
This release significantly expands the scope of bunker-stats beyond core statistics into resampling, time-series diagnostics, and distribution utilities, while keeping the original performance and numerical-stability goals intact.
✨ New & Expanded Capabilities
Resampling utilities
Bootstrap utilities
bootstrap_meanbootstrap_mean_cibootstrap_cibootstrap_corr
Jackknife utilities
jackknife_meanjackknife_mean_ci
All resampling routines are implemented in Rust and exposed via Python, avoiding Python-level resampling loops.
Time-series diagnostics & analysis
Stationarity tests
- Augmented Dickey–Fuller (ADF)
- KPSS
- Phillips–Perron (PP)
Diagnostic tests
- Ljung–Box
- Durbin–Watson
Autocorrelation tools
- ACF
- PACF
- Rolling autocorrelation
Spectral analysis
- Periodogram
(currently skipped in benchmarks; see Known Issues)
Distribution helpers
Normal distribution
norm_pdfnorm_cdfnorm_ppf
Exponential distribution
exp_pdfexp_cdf
Uniform distribution
unif_pdfunif_cdf
These helpers are lightweight numerical kernels designed for fast evaluation on large arrays.
Benchmarking focus (continued)
Benchmarks remain a first-class concern in this release:
- 500k-row workloads
- Subprocess isolation per function
- Warmups + repeated runs
- Percentile latency reporting (p50 / p95 / p99)
- Coefficient of variation (CV) for stability
- Optional peak memory tracking
This ensures results reflect realistic orchestration costs, not just microbenchmarks.
📈 Performance Summary
Strongest wins remain concentrated in:
- Rolling / windowed statistics
- Pairwise operations (covariance, correlation, rolling cov/corr)
- Several inference tests (e.g., chi-square, t-tests)
Performance improvements come primarily from:
- Fewer passes over data
- Reduced allocations
- Cache-friendly Rust loops
- Avoidance of Python-level rolling and masking logic
⚠️ Known Issues (Short & Explicit)
bg_testis currently skipped (known correctness issue)periodogramis currently skipped in benchmarksnorm_ppfcurrently expects inputs in[0, 1]
(input validation and error handling to be improved)
🔮 Planned for v0.2.9
Performance & architecture
- Matrix / axis-wise performance fixes
- Reduce Python ↔ Rust marshaling overhead
- Avoid
Vec<Vec<f64>>rebuilds - Minimize copies
- Return contiguous buffers more efficiently
- Avoid
Safety & correctness
- Replace internal panics with clean Python exceptions
- Improve input validation (e.g.,
norm_ppfand similar edge cases)
Benchmark & API hardening
- Tighten parity tolerances where appropriate
- Ensure benchmarks reflect the cleaned surface API
- No
_np-name coupling - Benchmark against public, documented functions only
- No
General improvements
- Optimization pass on hotspots revealed by 500k-row benchmarks
- Documentation & docstrings for Python-facing APIs
- Clear parameter semantics
- Short usage examples
📦 What Else Came from the Sandbox (sand_lib.rs → lib.rs)
In addition to the headline features above, the sandbox also contributed:
- Internal Rust kernel refactors that:
- Standardized slice-based APIs (
&[f64]) for statistical routines - Reduced duplicated logic across inference and resampling paths
- Standardized slice-based APIs (
- Shared numerical helpers reused by:
- Bootstrap
- Jackknife
- Hypothesis tests
- Consistent return-value conventions across:
- Scalars
- Tuples (e.g.
✅ Inference (SciPy parity) — src/infer/*
These are registered from src/lib.rs but implemented in the infer module:
| Function (Python syntax) | Location (Rust) |
|---|---|
t_test_1samp_np(x, popmean, alternative="two-sided") -> {"statistic": float, "pvalue": float} |
src/infer/ttest.rs (infer::ttest::t_test_1samp_np) |
t_test_2samp_np(x, y, equal_var=False, alternative="two-sided") -> {"statistic": float, "pvalue": float} |
src/infer/ttest.rs (infer::ttest::t_test_2samp_np) |
chi2_gof_np(observed, expected=None) -> {"statistic": float, "pvalue": float} |
src/infer/chi2.rs (infer::chi2::chi2_gof_np) |
chi2_independence_np(table) -> {"statistic": float, "pvalue": float, ...} |
src/infer/chi2.rs (infer::chi2::chi2_independence_np) |
mean_diff_ci_np(x, y, confidence=0.95) -> {"mean_diff": float, "ci_low": float, "ci_high": float} |
src/infer/effect.rs (infer::effect::mean_diff_ci_np) |
cohens_d_2samp_np(x, y, pooled=True) -> float |
src/infer/effect.rs (infer::effect::cohens_d_2samp_np) |
mann_whitney_u_np(x, y, alternative="two-sided") -> {"statistic": float, "pvalue": float} |
src/infer/mann_whitney.rs (infer::mann_whitney::mann_whitney_u_np) |
ks_1samp_np(x, dist="norm", args=None, alternative="two-sided") -> {"statistic": float, "pvalue": float} |
src/infer/ks.rs (infer::ks::ks_1samp_np) |
⚙️ Core numeric + transforms — src/lib.rs
Below are the Python-callable functions defined/registered in src/lib.rs.
(Internally, many call kernels in src/kernels/*.)
Basic statistics (1D)
mean_np(a) -> float—src/lib.rsmean_skipna_np(a) -> float—src/lib.rsmean_nan_np(a) -> float—src/lib.rsvar_np(a) -> float—src/lib.rsvar_skipna_np(a) -> float—src/lib.rsvar_nan_np(a) -> float—src/lib.rsstd_np(a) -> float—src/lib.rsstd_skipna_np(a) -> float—src/lib.rsstd_nan_np(a) -> float—src/lib.rszscore_np(a) -> np.ndarray—src/lib.rszscore_skipna_np(a) -> np.ndarray—src/lib.rsskew_np(a) -> float—src/lib.rskurtosis_np(a) -> float—src/lib.rs
Quantiles / robust summaries
percentile_np(a, q) -> float—src/lib.rs(kernel:src/kernels/quantile/percentile.rs)iqr_np(a) -> (q1, q2, q3)—src/lib.rs(kernel:src/kernels/quantile/iqr.rs)iqr_width_np(a) -> float—src/lib.rsmad_np(a) -> float—src/lib.rs(kernel:src/kernels/robust/mad.rs)trimmed_mean_np(a, proportion_to_cut) -> float—src/lib.rs(kernel:src/kernels/robust/trimmed_mean.rs)winsorize_np(a, limits=(low, high)) -> np.ndarray—src/lib.rs(kernel:src/kernels/quantile/winsor.rs)winsorize_clip_np(a, lower, upper) -> np.ndarray—src/lib.rs
Rolling windows (1D + axis-0)
-
rolling_mean_np(a, window, center=False) -> np.ndarray—src/lib.rs(kernel:src/kernels/rolling/*) -
rolling_var_np(a, window, center=False) -> np.ndarray—src/lib.rs -
rolling_std_np(a, window, center=False) -> np.ndarray—src/lib.rs -
rolling_mean_std_np(a, window, center=False) -> (means, stds)—src/lib.rs -
rolling_zscore_np(a, window, center=False) -> np.ndarray—src/lib.rs -
rolling_mean_axis0_np(a2d, window) -> np.ndarray—src/lib.rs(kernel:src/kernels/rolling/axis0.rs) -
rolling_std_axis0_np(a2d, window) -> np.ndarray—src/lib.rs -
rolling_mean_std_axis0_np(a2d, window) -> (means, stds)—src/lib.rs
Pairwise covariance/correlation (1D) + rolling variants
-
cov_np(x, y) -> float—src/lib.rs -
corr_np(x, y) -> float—src/lib.rs -
cov_nan_np(x, y) -> float—src/lib.rs -
corr_nan_np(x, y) -> float—src/lib.rs -
rolling_cov_np(x, y, window) -> np.ndarray—src/lib.rs(kernel:src/kernels/rolling/covcorr.rs) -
rolling_corr_np(x, y, window) -> np.ndarray—src/lib.rs -
rolling_cov_nan_np(x, y, window) -> np.ndarray—src/lib.rs -
rolling_corr_nan_np(x, y, window) -> np.ndarray—src/lib.rs
Matrix outputs (2D)
cov_matrix_np(a2d) -> np.ndarray—src/lib.rs(kernel:src/kernels/matrix/cov.rs)corr_matrix_np(a2d) -> np.ndarray—src/lib.rs(kernel:src/kernels/matrix/corr.rs)
Scaling / preprocessing
standard_scale_np(a) -> np.ndarray—src/lib.rsminmax_scale_np(a, feature_range=(0,1)) -> np.ndarray—src/lib.rsrobust_scale_np(a) -> np.ndarray—src/lib.rs
Time-series style transforms
diff_np(a, periods=1) -> np.ndarray—src/lib.rspct_change_np(a, periods=1) -> np.ndarray—src/lib.rscumsum_np(a) -> np.ndarray—src/lib.rscummean_np(a) -> np.ndarray—src/lib.rs
Distribution / empirical helpers
ecdf_np(a) -> (x_sorted, y)—src/lib.rsquantile_bins_np(a, q) -> np.ndarray[int]—src/lib.rs
Debug / masks / misc utilities
sign_mask_np(a) -> np.ndarray[bool]—src/lib.rsdemean_with_signs_np(a, signs) -> np.ndarray—src/lib.rspad_nan_np(a, left, right) -> np.ndarray—src/lib.rs
Extra / niche
welford_np(a) -> (mean, variance, n)—src/lib.rskde_gaussian_np(a, bw=None) -> (grid, density)—src/lib.rs
Effect sizes (also available from core wiring)
hedges_g_2samp_np(x, y, pooled=None) -> float—src/lib.rshedges_g_2samp_raw_np(x, y, pooled=True) -> float—src/lib.rs
🔧 Internal kernels (not called directly from Python) — src/kernels/*
Many wrappers in src/lib.rs delegate to optimized kernels, including:
src/kernels/rolling/*— rolling engines, axis-0 rolling, rolling cov/corr, fused zscoresrc/kernels/quantile/*— percentile (quickselect), IQR, winsorizationsrc/kernels/robust/*— MAD, trimmed meansrc/kernels/matrix/*— covariance/correlation matrices
These are implementation details, but the module split is what makes the library fast and maintainable.
Importing bunker-stats
Although bunker-stats is internally organized into Rust modules (e.g. inference and numeric kernels), the Python API is intentionally flat.
All functions are imported from the top-level package:
import bunker_stats as bs
bs.rolling_mean_np(x, window=30)
bs.mann_whitney_u_np(x, y)
bs.ks_1samp_np(x, dist="norm")
---
## Senior-dev recommendation (very clear)
For **v0.2.7**, your current approach is **correct**:
- flat Python API
- internal Rust modularization
- zero breaking changes for users
Don’t expose Python submodules until:
- the API is larger
- you need namespacing for clarity
- you’re closer to v1.0
If you want, next I can:
- audit your `__init__.py` for API cleanliness
- help you design a future `bunker_stats.infer` layout
- or write a “Quick Start” section for the README
But as of now: **users import it exactly like they always did.**
------------------------------------------------------------------------
| Function | Bunker-stats syntax | NumPy equivalent | pandas equivalent | Unique feature in `bunker-stats` |
|-------------|-------------|-------------|-------------|--------------------|
| `mean` | `bs.mean(x)` | `np.mean(x)` | `s.mean()` | 1D mean helper; always treats input as 1D numeric, thin Rust-backed wrapper. |
| `mean_skipna` | `bs.mean_skipna(x)` | `np.nanmean(x)` / manual mask | `s.mean(skipna=True)` | NaN-aware mean with explicit “skipna” semantics, matching pandas mental model. |
| `var` | `bs.var(x)` | `np.var(x, ddof=1)` | `s.var(ddof=1)` | 1D **sample** variance (`ddof=1`) by default; matches stats textbooks. |
| `var_skipna` | `bs.var_skipna(x)` | `np.nanvar(x, ddof=1)` / mask | `s.var(skipna=True, ddof=1)` | NaN-aware sample variance in one call. |
| `std` | `bs.std(x)` | `np.std(x, ddof=1)` | `s.std(ddof=1)` | 1D sample std with fixed `ddof=1`, consistent with `var`. |
| `std_skipna` | `bs.std_skipna(x)` | `np.nanstd(x, ddof=1)` / mask | `s.std(skipna=True, ddof=1)` | NaN-aware sample std; avoids writing masks every time. |
| `percentile` | `bs.percentile(x, q=0.95)` | `np.quantile(x, 0.95)` / `np.percentile` | `np.quantile(s, 0.95)` | Clean 1D percentile with your interpolation; integrated with other robust stats. |
| `mad` | `bs.mad(x)` | manual median/MAD | custom or `s.mad()` (mean abs dev, not median) | True median absolute deviation used by `robust_scale`. |
| `iqr` | `q1, q3, iqr = bs.iqr(x)` | `scipy.stats.iqr(x, rng=(25,75))` | `s.quantile([0.25, 0.75])` | Returns `(q1, q3, iqr)` in one go; no juggling multiple calls / indices. |
| `mean_axis` | `bs.mean_axis(X, axis=0, skipna=False)` | `np.mean(X, axis=0)` | `df.mean(axis=0, skipna=...)` | Axis-wise mean for 1D/2D arrays with optional `skipna`. |
| `var_axis` | `bs.var_axis(X, axis=1, skipna=True)` | `np.var(X, axis=1, ddof=1)` (no native skipna) | `df.var(axis=1, skipna=...)` | Axis-wise sample variance with built-in NaN handling. |
| `std_axis` | `bs.std_axis(X, axis=1, skipna=True)` | `np.std(X, axis=1, ddof=1)` (no native skipna) | `df.std(axis=1, skipna=...)` | Axis-wise sample std + `skipna`; aligns pandas mental model with NumPy arrays. |
| `mean_last_axis`\* | `bs.mean_last_axis(X)` *(if exposed)* | `np.mean(X, axis=-1)` | `df.to_numpy().mean(axis=-1)` | N-D mean over last axis, consistent with your N-D rolling API. |
| `rolling_mean_last_axis` | `bs.rolling_mean_last_axis(X, window=3)` | manual reshape + loop / `np.apply_along_axis` | no built-in; need groupby+apply / custom logic | Shape-preserving N-D rolling mean over **last axis** (e.g. `(batch, feat, time)`). |
| `rolling_std_last_axis` | `bs.rolling_std_last_axis(X, window=3)` | same as above | same | N-D rolling std over last axis; perfect for batched time-series / ML tensors. |
| `rolling_mean` | `bs.rolling_mean(x, window=5)` | manual loop or `np.convolve` trick | `s.rolling(5).mean()` | Fast 1D rolling mean (truncated length) with no index overhead. |
| `rolling_std` | `bs.rolling_std(x, window=5)` | manual loop | `s.rolling(5).std()` | 1D rolling std at Rust speed, sample variance convention. |
| `rolling_zscore` | `bs.rolling_zscore(x, window=20)` | manual window loop | `s.rolling(20).apply(custom)` | Rolling z-score in a single function; avoids `apply`/UDF overhead. |
| `ewma` | `bs.ewma(x, alpha=0.1)` | manual recurrence | `s.ewm(alpha=0.1).mean()` | Minimal EWMA for pure numeric arrays, no pandas object overhead. |
| `df_rolling_mean` | `bs.df_rolling_mean(df, window=5)` | `np.convolve` per column | `df.rolling(5).mean()` | DataFrame in / out, but columns powered by Rust rolling mean. |
| `df_rolling_std` | `bs.df_rolling_std(df, window=5)` | manual per-column | `df.rolling(5).std()` | Same for std; uses your rolling core but preserves pandas index. |
| `df_ewma` | `bs.df_ewma(df, alpha=0.1)` | manual per-column EWMA | `df.ewm(alpha=0.1).mean()` | Per-column EWMA with Rust engine, lighter than full pandas EWM machinery. |
| `col_mean` | `bs.col_mean(df, skipna=True)` | `np.mean(df.to_numpy(), axis=0)` | `df.mean(axis=0, skipna=True)` | Column-wise mean; internally uses `mean_axis` + `skipna`, returns labeled Series. |
| `row_mean` | `bs.row_mean(df, skipna=True)` | `np.mean(df.to_numpy(), axis=1)` | `df.mean(axis=1, skipna=True)` | Row-wise mean with Rust numeric core + pandas index. |
| `cov_df` | `bs.cov_df(df)` | `np.cov(df.to_numpy().T, ddof=1)` | `df.cov()` | Full covariance matrix via Rust `cov_matrix`, but returned as a DataFrame. |
| `corr_df` | `bs.corr_df(df)` | `np.corrcoef(df.to_numpy().T)` | `df.corr()` | Correlation matrix backed by your Rust correlation engine. |
| `rolling_mean_series` | `bs.rolling_mean_series(s, window=10)` | manual 1D loop | `s.rolling(10).mean()` | Series-in / Series-out convenience wrapper around Rust rolling mean. |
| `rolling_std_series` | `bs.rolling_std_series(s, window=10)` | manual 1D loop | `s.rolling(10).std()` | Same for std; keeps index alignment, uses Rust core. |
| `iqr_outliers` | `bs.iqr_outliers(x, k=1.5)` | `iqr = scipy.stats.iqr(x); mask = ...` | quantiles + boolean mask | Returns a boolean outlier mask in one call using IQR rule. |
| `zscore_outliers` | `bs.zscore_outliers(x, threshold=3.0)` | `(np.abs((x-x.mean())/x.std()) > 3)` | same logic on `Series` | One-liner z-score outlier mask; integrates with your `mean`/`std` semantics. |
| `minmax_scale` | `scaled, mn, mx = bs.minmax_scale(x)` | manual `(x-mn)/(mx-mn)` | use `MinMaxScaler` from sklearn | Returns both **scaled data** and the `(min, max)` used (for inverse-transform/reuse). |
| `robust_scale` | `scaled, med, mad = bs.robust_scale(x, scale_factor)` | manual MAD calculation | `RobustScaler` or custom | All-in-one robust scaling with returned `(median, MAD)`; pairs with your `mad`. |
| `winsorize` | `bs.winsorize(x, lower_q=0.05, upper_q=0.95)` | `scipy.stats.mstats.winsorize(x, limits=...)` | custom quantile clipping | 1D winsorization in Rust, single call returning a full adjusted array. |
| `diff` | `bs.diff(x, periods=1)` | `np.diff(x, n=1)` (shorter) / manual padding | `s.diff(periods=1)` | Full-length diff with NaNs where necessary; supports negative `periods`. |
| `pct_change` | `bs.pct_change(x, periods=1)` | manual `(x[i]-x[i-p]) / x[i-p]` | `s.pct_change(periods=1)` | Includes divide-by-zero → NaN handling; symmetric for positive/negative lags. |
| `cumsum` | `bs.cumsum(x)` | `np.cumsum(x)` | `s.cumsum()` | Rust implementation; value is performance on large 1D arrays. |
| `cummean` | `bs.cummean(x)` | `np.cumsum(x)/np.arange(1,len(x)+1)` | `s.expanding().mean()` | Streaming cumulative mean without constructing expanding windows. |
| `ecdf` | `vals, probs = bs.ecdf(x)` | manual sort + rank | custom `rank`/`value_counts` | Returns **sorted values + CDF** in one go; perfect for ECDF plots. |
| `quantile_bins` | `bins = bs.quantile_bins(x, n_bins=10)` | manual rank + binning | `pd.qcut(x, q=10)` (Categorical) | Returns plain integer bin labels `0..n_bins-1` as a NumPy array (ML-friendly). |
| `sign_mask` | `mask = bs.sign_mask(x)` | `np.sign(x).astype(np.int8)` | `(s > 0) - (s < 0)` | Encodes sign into `{-1, 0, 1}`; useful for discrete signal features. |
| `demean_with_signs` | `demeaned, signs = bs.demean_with_signs(x)` | `(x - x.mean(), np.sign(x - x.mean()))` | custom | Returns **both** demeaned data and sign mask in one pass. |
| `cov` | `bs.cov(x, y)` | `np.cov(x, y, ddof=1)[0,1]` | `s1.cov(s2)` | 1D sample covariance as a simple scalar function. |
| `corr` | `bs.corr(x, y)` | `np.corrcoef(x, y)[0,1]` | `s1.corr(s2)` | 1D Pearson correlation using your var/std core. |
| `cov_skipna` | `bs.cov_skipna(x, y)` | manual pairwise dropna + `np.cov` | `s1.cov(s2)` with aligned/dropna | Pairwise NaN dropping built in for 1D covariance. |
| `corr_skipna` | `bs.corr_skipna(x, y)` | manual pairwise dropna + `np.corrcoef` | `s1.corr(s2)` with dropna | Same but for correlation; hides the messy mask-bookkeeping. |
| `cov_matrix` | `bs.cov_matrix(X)` | `np.cov(X, rowvar=False, ddof=1)` | `df.cov()` | Symmetric covariance matrix with Rust loops; tuned for tabular X. |
| `corr_matrix` | `bs.corr_matrix(X)` | `np.corrcoef(X, rowvar=False)` | `df.corr()` | Correlation matrix built on your cov/std stack; consistent behaviour across code paths. |
| `rolling_cov` | `bs.rolling_cov(x, y, window=50)` | manual sliding window + `np.cov` | `df['x'].rolling(50).cov(df['y'])` | Rolling 1D covariance without pandas overhead; good for streaming stats. |
| `rolling_corr` | `bs.rolling_corr(x, y, window=50)` | manual sliding window + `np.corrcoef` | `df['x'].rolling(50).corr(df['y'])` | Rolling 1D correlation in one Rust call; no custom loop needed in Python. |
| `kde_gaussian` | `grid, dens = bs.kde_gaussian(x, n_points=256)` | `scipy.stats.gaussian_kde(x)` + evaluation | no direct builtin (need SciPy) | Lightweight 1D Gaussian KDE; returns `(grid, density)` using a simple bandwidth rule by default. |
## 📦 Installation
\`\`\`bash git clone https://github.com/bunker-stats.git cd bunker-stats
python -m venv .venv source .venv/bin/activate \# Windows: .venv\Scripts\activate
pip install maturin maturin develop
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| MD5 |
63f3db41565b2932a79aeec8d94acb40
|
|
| BLAKE2b-256 |
ef31f57694f1d68b310a52d2349d137a3f6117d80b6ad62267299b821486cb7b
|