A Python-based environment for the GA4GH Beacon genomics API

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License: CC0-1.0

Bycon - a Python-based full stack environment for the Beacon genomics API

The bycon project implements a data hosting environment for genomic and pheno-clinical data aligned with the GA4GH Beacon data model. It provides a Beacon API for data query and retrieval but also has extended functionality with a focus on genomic copy number variation data. For a prominent implementation example showcasing bycon features please see the Progenetix oncogenomic resource.

The underlying database system utilizes a MongoDB instance and a storage model following for the most part the GA4GH object model.

Additionally, the bycon project implements functions for the ingestion and management of genomic variants and phenoclinical data, and provides a front end for the Beacon API as a statically compiled React project ("beaconPlus"). An instance of the beaconPlus front end is accessible at beaconplus.progenetix.org.

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Documentation has been moved to bycon.progenetix.org. Due to the rapid code development it is recommended to keep following the Changes page.

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The installation is documented on the website (and in the page's Markdown source here).

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