finds the number and types of complement component 4 (C4) genes in a fasta file. minimap2 is used for mapping
Project description
c4counter
This skript takes fasta files containing human HLA regions and returns the number and types of C4 genes (C4A / C4B, HERV / no HERV). In addition, a simple graphical representation in svg format is generated (name: c4.svg)
Dependencies
minimap2 is used for mapping
Installation
pip
pip install c4counter
please make sure you have minimap2 installed
bioconda
conda install c4counter
conda will install minimap2 for you
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