c4counter
This skript takes fasta files containing human HLA regions and returns the number and types of C4 genes (C4A / C4B, HERV / no HERV). In addition, a simple graphical representation in svg format is generated (name: c4.svg)
Dependencies
minimap2 is used for mapping
Installation
pip
pip install c4counter
please make sure you have minimap2 installed
bioconda
conda install c4counter
conda will install minimap2 for you
1 maintainer
Metadata
1 maintainer
Release files for c4counter 0.0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| c4counter-0.0.2.tar.gz | 15.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| c4counter-0.0.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 29.8 kB
Release files / c4counter-0.0.2.tar.gz
| Download URL | c4counter-0.0.2.tar.gz |
|---|---|
| Size | 15.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
df3d14cffb3043d9ebd86ab75d271ba66eff2df1a7533449d4df4aecf4d1d553
|
|
BLAKE2b-256 checksum How to use checksums |
f7135b8240f22b800032ee733b9099fc2db3ebc626318faba380196cc1000a98
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.10.4
|
Release files / c4counter-0.0.2-py3-none-any.whl
| Download URL | c4counter-0.0.2-py3-none-any.whl |
|---|---|
| Size | 14.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
cc7727bea92fd4d1da718f0124b6730d576fdd20b153cce6931a91545693ba70
|
|
BLAKE2b-256 checksum How to use checksums |
8ccf444313b7e3aab3c57db82167dda0ed8c9f63b897196f6ad4f61c684e3b76
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.10.4
|
