finds the number and types of complement component 4 (C4) genes in a fasta file. minimap2 is used for mapping

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Project description

c4counter

This skript takes fasta files containing human HLA regions and returns the number and types of C4 genes (C4A / C4B, HERV / no HERV). In addition, a simple graphical representation in svg format is generated (name: c4.svg)

Dependencies

minimap2 is used for mapping

Installation

pip

pip install c4counter

please make sure you have minimap2 installed

bioconda

conda install c4counter

conda will install minimap2 for you

Project details

These details have not been verified by PyPI

Project links

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0.0.2

Jun 10, 2022

This version

0.0.1

Jun 9, 2022

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Source Distribution

c4counter-0.0.1.tar.gz (14.4 kB view hashes)

Uploaded Jun 9, 2022 Source

Built Distribution

c4counter-0.0.1-py3-none-any.whl (13.8 kB view hashes)

Uploaded Jun 9, 2022 Python 3

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Hashes for c4counter-0.0.1-py3-none-any.whl

Hashes for c4counter-0.0.1-py3-none-any.whl
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