calibrated-similarity 0.1.0

Null-calibrated similarity metrics via permutation testing

calibrated-similarity

Null-calibrated similarity metrics via permutation testing.

This package implements the calibration algorithms from:

Revisiting the Platonic Representation Hypothesis: An Aristotelian View Gröger, Wen, Brbić.

Installation

pip install calibrated-similarity

The Problem

Representation similarity metrics (CKA, kNN overlap, RSA, etc.) have non-zero random baselines that depend on sample size, dimensionality, and the metric itself:

• A raw score of 0.3 might be highly significant in one setting but within random chance in another
• Comparing scores across studies with different configurations is misleading
• Searching for the best-matching layer pair inflates scores even under the null

The Solution

Null calibration uses permutation testing to estimate what similarity scores look like under the null hypothesis (no true alignment). It returns a calibrated score that is zero under the null, enabling valid comparisons.

Quick Start

import torch
from calibrated_similarity import calibrate, calibrate_layers

# Define any similarity function
def cka(X, Y):
    X, Y = X - X.mean(0), Y - Y.mean(0)
    hsic_xy = (X @ X.T * (Y @ Y.T)).sum()
    hsic_xx = (X @ X.T * (X @ X.T)).sum()
    hsic_yy = (Y @ Y.T * (Y @ Y.T)).sum()
    return hsic_xy / torch.sqrt(hsic_xx * hsic_yy)

# Sample data
X = torch.randn(100, 64)
Y = torch.randn(100, 64)

# Calibrate the similarity
calibrated_score, p_value, threshold = calibrate(X, Y, cka)
print(f"Calibrated: {calibrated_score:.3f}, p={p_value:.3f}")

API Reference

calibrate() — Scalar Calibration

Calibrates a single similarity score against a permutation null distribution:

calibrated_score, p_value, tau = calibrate(
    X, Y, sim_fn,
    K=200,        # Number of permutations
    alpha=0.05,   # Significance level
    smax=1.0,     # Maximum possible similarity
)

Returns:

• calibrated_score: Normalized score in [0, 1], zero under the null at level alpha
• p_value: Add-one permutation p-value
• tau: Critical threshold at the (1-alpha) quantile

calibrate_layers() — Aggregation-Aware Calibration

For comparing multiple layers between two models, applies the same permutation across all layers to properly control for multiple comparisons:

X_layers = [model_A.layer(i, data) for i in range(5)]
Y_layers = [model_B.layer(j, data) for j in range(5)]

calibrated_agg, p_value, tau = calibrate_layers(
    X_layers, Y_layers, sim_fn,
    agg="max",    # "max", "mean", or custom callable
)

Features

• Any similarity function: Works with CKA, kNN, RSA, cosine similarity, or custom metrics
• Valid p-values: Uses the add-one formula for proper permutation p-values
• GPU support: Tensors stay on their original device
• Reproducible: Optional generator parameter for deterministic results

Citation

@article{groger2026revisiting,
  title   = {Revisiting the Platonic Representation Hypothesis: An Aristotelian View},
  author  = {Gr{\"o}ger, Fabian and Wen, Shuo and Brbi{\'c}, Maria},
  journal = {arXiv preprint},
  year    = {2026},
}

License

MIT