CaMAP — Calcium imaging mapping and analysis pipeline
Verified details
These details have been verified by PyPIProject links
GitHub Statistics
Maintainers
Project description
CaMAP
Calcium imaging mapping and analysis pipeline. Extracts neural events from calcium traces, aligns them with animal behavior, and computes spatial tuning metrics including rate maps, spatial information, stability, and place-cell classification.
Alpha-stage in
0.x— APIs may change between minor releases.
Install
pip install camap
oasis-deconv is required for the deconvolution step; see
Installation for the
recommended install path.
Minimum example
from camap.dataset import BaseCaMAPDataset
ds = BaseCaMAPDataset.from_yaml("config.yaml", "data_paths.yaml")
ds.load()
ds.preprocess_behavior()
ds.deconvolve()
ds.match_events()
ds.compute_occupancy()
ds.analyze_units()
ds.save_bundle("output/session_name")
Documentation
License
AGPL-3.0. See LICENSE.
Project details
Verified details
These details have been verified by PyPIProject links
GitHub Statistics
Maintainers
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file camap-0.1.2.tar.gz.
File metadata
- Download URL: camap-0.1.2.tar.gz
- Upload date:
- Size: 10.1 MB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.13.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
4413fc121c3fdd294c980cc39eb8ef3cb9d5c94d57e83119ca5b9e7aa92d9e8b
|
|
| MD5 |
2adcf0dcf510347924599ffce0efdbaf
|
|
| BLAKE2b-256 |
d499c73b25286880fbda0e4441117e69218ba0b5acbb163a25e4a11bbf560d78
|
Provenance
The following attestation bundles were made for camap-0.1.2.tar.gz:
Publisher:
release.yml on miniscope/CaMAP
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
camap-0.1.2.tar.gz -
Subject digest:
4413fc121c3fdd294c980cc39eb8ef3cb9d5c94d57e83119ca5b9e7aa92d9e8b - Sigstore transparency entry: 1447891342
- Sigstore integration time:
-
Permalink:
miniscope/CaMAP@1e52ca059a8f8de7d38358204fae086b6a5422fe -
Branch / Tag:
refs/tags/v0.1.2 - Owner: https://github.com/miniscope
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
release.yml@1e52ca059a8f8de7d38358204fae086b6a5422fe -
Trigger Event:
push
-
Statement type:
File details
Details for the file camap-0.1.2-py3-none-any.whl.
File metadata
- Download URL: camap-0.1.2-py3-none-any.whl
- Upload date:
- Size: 130.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.13.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
7a386aa1415888e3e92045ea2ea2a155cc507a595f39e292b67aa7ac7c918848
|
|
| MD5 |
4f3be7ee27b99532c88581bbf4db7e55
|
|
| BLAKE2b-256 |
953ffe6b2b42feaf8bc4fbc0b7eb943cffaf5e20088c06b0142670c4d1736966
|
Provenance
The following attestation bundles were made for camap-0.1.2-py3-none-any.whl:
Publisher:
release.yml on miniscope/CaMAP
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
camap-0.1.2-py3-none-any.whl -
Subject digest:
7a386aa1415888e3e92045ea2ea2a155cc507a595f39e292b67aa7ac7c918848 - Sigstore transparency entry: 1447891443
- Sigstore integration time:
-
Permalink:
miniscope/CaMAP@1e52ca059a8f8de7d38358204fae086b6a5422fe -
Branch / Tag:
refs/tags/v0.1.2 - Owner: https://github.com/miniscope
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
release.yml@1e52ca059a8f8de7d38358204fae086b6a5422fe -
Trigger Event:
push
-
Statement type:
