CAMEL core is a set of utilities used by Bioinformatics Platform at the Belgian Public Health institute (Sciensano).
Project description
CAMEL core
CAMEL core is a set of utilities used by Bioinformatics Platform at the Belgian Public Health institute (Sciensano).
This package is not meant to be used directly, but contains functionality that is shared between various projects.
Functionality
- Command execution through subprocess
- Input/output (IO) classes for handling tool / input output
- Utility functions for handling common bioinformatics formats such as FASTA, FASTQ, VCF, BAM
- Generating HTML reports with python code
- Utility functions for executing Snakemake
- A basic logger
Installation
CAMEL core is available as a pip package for Python >=3.12.
pip install camel-core
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