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A simple web-based viewer for 3D and 4D ('cine') medical imaging data.

Project description

cardio

cardio is a simple web-based viewer for 3D and 4D ('cine') medical imaging data, built primarily on trame, vtk, and itk. cardio can render sequences of mesh files (e.g., *.obj files), segmentation files (e.g., *.nii.gz files with discrete labels) and volume renderings of grayscale images (e.g., *.nii.gz files with continuous values). cardio is launched from the commandline and may be configured via commandline arguments, a static TOML configuration file, or a combination of the two.

Quickstart

Installation

$ cd /path/to/your/project
$ uv init
$ uv add cardio
$ . ./.venv/bin/activate

Developing

Ensuring you have all required dependencies:

$ uv sync --all-extras

Pre-commit checklist:

$ isort .
$ ruff format
$ pytest -v

Uploading:

$ uv version --bump major # Year
$ uv version --bump minor # Month
$ uv version --bump patch $ Day
$ git tag -a $(cardio --version) -m "Release $(cardio --version)"
$ rm -rf dist/
$ uv build --no-sources
$ git push origin main --follow-tags
$ uv publish --token <pypi_api_key>

Project details


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  • Uploaded using Trusted Publishing? No
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