CaTune companion: calcium imaging deconvolution and data preparation
Project description
CaTune Python Companion
Calcium imaging deconvolution and data preparation -- Python companion package for the CaTune browser tool.
Installation
pip install catune
Quick Start
import catune
# Build a calcium kernel
kernel = catune.build_kernel(tau_rise=0.02, tau_decay=0.4, fs=30.0)
# Get AR(2) coefficients
g1, g2, d, r = catune.tau_to_ar2(tau_rise=0.02, tau_decay=0.4, fs=30.0)
# Compute Lipschitz constant for FISTA step size
L = catune.compute_lipschitz(kernel)
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