cc-qa 0.2.1

QA based on compliance-checker

Project Moved to GitHub

This repository has been moved to https://github.com/ESGF/esgf-qa and also been renamed in the process from cc-qa to esgf-qa.

No further updates will be made here or to the cc-qa PyPI package. Please install the package in the future via pip install esgf-qa (https://pypi.org/project/esgf-qa/).

cc-qa: Quality Assurance Workflow Based on compliance-checker and cc-plugin-cc6

This makes use of the frameworks and CF-compliance checks of the ioos/compliance-checker and extensions coming with euro-cordex/cc-plugin-cc6.

This tool is designed to run the desired file-based QC tests with ioos/compliance-checker and euro-cordex/cc-plugin-cc6, conduct additional dataset-based checks (such as time axis continuity and consistency checks) as well as summarizing the test results.

cc-qa is mainly aimed at a QA workflow testing compliance with CORDEX-CMIP6 Archive Specifications (see below). However, it is generally applicable to test for compliance with the CF conventions through application of the IOOS Compliance Checker, and it is easily extendable for any cc-plugin and for projects defining CORDEX, CORDEX-CMIP6, CMIP5 or CMIP6 style CMOR-tables.

Standard	Checker Name
cordex-cmip6-cv	cc6
cordex-cmip6-cmor-tables	cc6
CORDEX-CMIP6 Archive Specifications	cc6
CMIP6 DRS	wcrp_cmip6 (esgf-qc)
cmip6-cmor-tables	wcrp_cmip6 (esgf_qc)
CMIP6 CVs	wcrp_cmip6 (esgf_qc)
EERIE CMOR Tables & CV	eerie
Custom MIP	mip

Installation

Pip installation

$ pip install cc_qa

Pip installation from source

Clone the repository and cd into the repository folder, then:

$ pip install -e .

Optionally install the dependencies for development:

$ pip install -e .[dev]

See the ioos/compliance-checker for additional Installation notes if problems arise with the dependencies.

Usage

$ ccqa [-h] [-o <OUTPUT_DIR>] [-t <TEST>] [-O OPTION] [-i <INFO>] [-r] [-C] <parent_dir>

• positional arguments:
  • parent_dir: Parent directory to scan for netCDF-files to check
• options:
  • -h, --help: show this help message and exit
  • -o, --output_dir OUTPUT_DIR: Directory to store QA results. Needs to be non-existing or empty or from previous QA run. If not specified, will store results in ./cc-qa-check-results/YYYYMMDD-HHmm_<hash>.
  • -t, --test TEST: The test to run ('cc6:latest' or 'cf:', can be specified multiple times, eg.: '-t cc6:latest -t cf:1.8') - default: running 'cc6:latest' and 'cf:1.11'.
  • -O, --option OPTION: Additional options to be passed to the checkers. Format: ':<option_name>[:<option_value>]'. Multiple invocations possible.
  • -i, --info INFO: Information used to tag the QA results, eg. the simulation id to identify the checked run. Suggested is the original experiment-id you gave the run.
  • -r, --resume: Specify to continue a previous QC run. Requires the <output_dir> argument to be set.
  • -C, --include_consistency_checks: Include basic consistency and continuity checks. When using cc6, mip or eerie checkers, they are included by default.

Example Usage

$ ccqa -o /work/bb1364/dkrz/QC_results/IAEVALL02_2025-04-20 -i "IAEVALL02" /work/bb1149/ESGF_Buff/IAEVALL02/CORDEX-CMIP6

To resume at a later date, eg. if the QA run did not finish in time or more files have been added to the <parent_dir> (note, that the last modification date of files is NOT taken into account - once a certain file path has been checked it will be marked as checked and checks will only be repeated if runtime errors occured):

$ ccqa -o /work/bb1364/dkrz/QC_results/IAEVALL02_2025-04-20 -r

For an esgf-qc test:

$ ccqa -o /path/to/QA_results/ -t "cf:1.7" -t "wcrp_cmip6:latest" /path/to/CMIP6/datasets/

For a custom MIP with defined CMOR tables ("mip" is not a placeholder but an actual basic checker of the cc_plugin_cc6):

$ ccqa -o /path/to/test/results -t "mip:latest" -O "mip:tables:/path/to/mip_cmor_tables/Tables" /path/to/MIP/datasets/`

For CF checks and basic time and consistency / continuity checks:

$ ccqa -o /path/to/test/results -t "cf:1.11" -C /path/to/datasets/to/check

Displaying the check results

The results will be stored in a single json file, which can be viewed using the following website: https://cmiphub.dkrz.de/info/display_qc_results.html. This website runs entirely in the user's browser using JavaScript, without requiring interaction with a web server. Alternatively, you can open the included display_qc_results.html file directly in your browser.

Add results to QA results repository

https://cmiphub.dkrz.de/info/display_qc_results.html allows viewing QA results hosted in the GitLab Repository qa-results. You can create a Merge Request in that repository to add your own results.

Install ESGF-QC as compliance_checker plugin rather than a compliance_checker replacement

Since ESGF-QC is set up as fork of the IOOS compliance_checker, rather than a plugin, installing ESGF-QC and compliance_checker at the same time is not possible: Installing ESGF-QC will replace / overwrite any installation of the IOOS compliance_checker.

The alternatives are to set up different virtual environments for each tool or to mimic an esgf-qc plugin for compliance_checker, enabling to use the wcrp_cmip6 and other checkers set up in esgf-qc within the compliance_checker. As long as there are no incompatibilities introduced in esgf_qc (which is currently the case) the latter one is a viable option, and is explained in the following:

• Clone the esgf-qc repository

git clone https://github.com/ESGF/esgf-qc.git

• Create a esgf-qc-plugin directory and softlink the necessary folders

mkdir -p esgf-qc-plugin/esgf-qc
cd esgf-qc-plugin
ln -s ../esgf-qc/checks ./esgf-qc/
ln -s ../esgf-qc/wcrp ./esgf-qc/

• Link the included pyproject_esgf-qc-plugin.toml from this repository

ln -s ../cc-qa/pyproject_esgf-qc-plugin.toml ./pyproject.toml

• pip install as plugin

pip install -e . --no-deps

• Set up esgvoc as described in the esgf-qc readme

pip install esgvoc
esgvoc config set universe:branch=esgvoc_dev
esgvoc install

• Test your installation

The following command should now also list the esgf-qc checks next to all cc_plugin_cc6 and compliance_checker checks:

cchecker.py -l

License

This project is licensed under the Apache License 2.0, and includes the Inter font, which is licensed under the SIL Open Font License 1.1. See the LICENSE file for more details.