Introduction

CeleScope is a collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria.

Mirror

If you have problems connecting to github, try: https://gitee.com/singleron-rd/celescope/

Documentation

User guide

Support

For instant technical assistance and deep-dive queries into the CeleScope source code, you can now interact with this NotebookLM.

This notebook has been indexed with the complete CeleScope codebase and documents, allowing you to ask specific questions about command-line arguments, algorithm implementations, or error troubleshooting.

Still need help? If the AI does not resolve your query, please use the GitHub Issue Tracker to report malfunctions or ask further questions.

About

CeleScope is currently developed by Singleron Biotechnologies.

www.singleron.bio

Project links

Key dates

PyPI data
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  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for zhouyiqi91 from gravatar.com zhouyiqi91

Credits

Author: zhouyiqi

License

MIT License

Requires

Python >=3.6

Classifiers

Report project as malware

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Source Distribution

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Release history Release notifications | RSS feed

This release

2.12.0

2.11.6.dev2 pre-release

2.11.5

2.11.4

2.11.3

2.11.2

2.11.1

2.11.0

2.10.3

2.10.2

2.10.1

2.10.0

2.9.0

2.8.0

2.7.6

2.7.5

2.7.4

2.7.3

2.7.2

2.7.1

2.7.0

2.6.1

2.6.0

2.5.0

2.4.0

2.3.3

2.3.2

2.3.1

2.3.1.dev0 pre-release

2.3.0

2.3.0.dev2 pre-release

2.3.0.dev1 pre-release

2.3.0.dev0 pre-release

2.2.2

2.2.1

2.2.0

2.2.0.dev1 pre-release

2.2.0.dev0 pre-release

2.1.0

2.0.9

2.0.8 yanked

Reason this release was yanked:

data not uploaded

2.0.7

2.0.6

2.0.5

2.0.4

2.0.3

2.0.2

2.0.1

2.0.0

2.0.0b0 pre-release

1.17.0

1.16.2

1.16.1 yanked

Reason this release was yanked:

when using multithreading, the same (barcode, gene) combination in the matrix may have multiple entries.

1.16.0

1.16.0b0 pre-release

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.1

1.14.0

1.14.0b0 pre-release

1.13.0

1.12.1

1.12.0

1.12.0b0 pre-release

1.11.1

1.11.0

1.11.0b1 pre-release

1.11.0b0 pre-release

1.10.0

1.9.0

1.8.1

1.8.0

1.7.2

1.7.1

1.7.0 yanked

Reason this release was yanked:

bug with `mt_gene_list`

1.6.1

1.6.0 yanked

Reason this release was yanked:

bug in featureCounts

1.5.2

1.5.1

1.5.1b0 pre-release

1.5.0

1.4.0

1.3.2

1.3.1

1.3.0

1.2.0

1.1.9

1.1.9b1 pre-release

1.1.9b0 pre-release

1.1.8

1.1.8b0 pre-release

1.1.7

1.1.7b0 pre-release

1.1.6

1.1.6b0 pre-release

1.1.4

1.1.3

1.1.2

1.1.1

1.1.0 yanked

Reason this release was yanked:

unstable

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