cell-tools is a Single-Cell Data Analysis Toolkit with the following areas of focus and development:
- scRNA-seq data
- scATAC-seq data
- Multiomic (mostly scRNA-seq + scATAC-seq) data
Funtion development will likely focus on scATAC-seq given that there are so many python-implemented tools developed already for scRNA-seq. However, wrappers that enable batch-mode QC and pipeline-oriented solutions have been designed and will eventually be added.
Installation
Install the development package:
# (1) clone this repository
git clone https://github.com/mvinyard/cell-tools.git
# (2) install the local project in editable mode
cd ./perturb-tools; pip install -e .
1 maintainer
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