CellO: Cell Ontology-based Classification
CellO (Cell Ontology-based classification) is a Python package for performing cell type classification of human RNA-seq data. CellO makes hierarchical predictions against the Cell Ontology (http://www.obofoundry.org/ontology/cl.html). These classifiers were trained on nearly all of the human primary cell, bulk RNA-seq data in the NCBI’s Sequence Read Archive.
For instructions on installing and running CellO, see the GitHub repository: https://github.com/deweylab/CellO
For more details regarding the underlying method, see the paper:
Bernstein, M.N., Ma, J., Gleicher, M., Dewey, C.N. (2020). CellO: Comprehensive and hierarchical cell type classification of human cells with the Cell Ontology. iScience, 24(1), 101913. https://doi.org/10.1016/j.isci.2020.101913.
1 maintainer
Metadata
1 maintainer
Release files for cello-classify 2.1.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| cello_classify-2.1.1-py3-none-any.whl | Python 3 | none | any | Details for cello_classify-2.1.1-py3-none-any.whl |
Release files / cello_classify-2.1.1-py3-none-any.whl
| Download URL | cello_classify-2.1.1-py3-none-any.whl |
|---|---|
| Size | 11.2 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
a77779a77f47a393ed1d1bb2e5c5eeaf212ae208cd86803cf3c06dcae4c28055
|
|
BLAKE2b-256 checksum How to use checksums |
dfaaaada798e8855f925c6a967bf2e35dfe4d447a7c2c61d6cc1785dac4bce05
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.4.1 importlib_metadata/3.7.3 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.7.8
|
Security for cello-classify 2.1.1
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
