CellOracle
CellOracle is a python library for in silico gene perturbation analyses using single-cell omics data and Gene Regulatory Network models.
For more information, please read our paper: Dissecting cell identity via network inference and in silico gene perturbation.
Documentation, Codes, and Tutorials
CellOracle documentation is available through the link below.
Questions and errors
If you have a question, error, bug, or problem, please use the Github issue page.
Supported Species and reference genomes
Human: [‘hg38’, ‘hg19’]
Mouse: [‘mm39’, ‘mm10’, ‘mm9’]
S.cerevisiae: [“sacCer2”, “sacCer3”]
Zebrafish: [“danRer7”, “danRer10”, “danRer11”]
Xenopus tropicalis: [“xenTro2”, “xenTro3”]
Xenopus laevis: [“Xenopus_laevis_v10.1”]
Rat: [“rn4”, “rn5”, “rn6”]
Drosophila: [“dm3”, “dm6”]
C.elegans: [“ce6”, “ce10”]
Arabidopsis: [“TAIR10”]
Chicken: [“galGal4”, “galGal5”, “galGal6”]
Guinea Pig: [“Cavpor3.0”]
Pig: [“Sscrofa11.1”]
Changelog
Please go to this page.
1 maintainer
Metadata
1 maintainer
Release files for celloracle 0.20.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| celloracle-0.20.0.tar.gz | 12.2 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| celloracle-0.20.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 24.6 MB
Release files / celloracle-0.20.0.tar.gz
| Download URL | celloracle-0.20.0.tar.gz |
|---|---|
| Size | 12.2 MB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / celloracle-0.20.0-py3-none-any.whl
| Download URL | celloracle-0.20.0-py3-none-any.whl |
|---|---|
| Size | 12.4 MB |
| Tags | Python 3 |
|
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No |
| Uploaded via |
twine/5.1.1 CPython/3.8.15
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