Skip to main content

Modules used throughout the tools developed and maintained by the Center for Genomic Epidemiology (CGE).

Project description

CGE Core Module version 2 released

The cgecore module have been updated to version 2.0.0. Despite earlier announcements, we have decided to try and keep most of the legacy functionality in version 2. All CGE tools should work with this updated version. However, we did not have the resources to test it with all CGE tools. This version includes all functionality from the cgelib package version 0.7.5. The cgelib package has been deprecated and all functionality has been moved to the cgecore package. The cgecore package is now the one-stop core module for the Center for Genomic Epidemiology.

Please note that some parts of the added functionality is still in development and tests are far from complete.

cge_core_module

Core module for the Center for Genomic Epidemiology

This module contains classes and functions needed to run the service wrappers and pipeline scripts

The pypi project can be found here: https://pypi.org/project/cgecore/

How to update:

  1. Make changes to the modules
  2. Bump the version number accordingly in cgecore/init.py
  3. Install package locally
  4. Test the changes locally (for both python2 and python3)
  5. Distribute to Pypi

Install package locally

python2 setup.py install

python3 setup.py install

Distribute to PyPi

python3 setup.py sdist bdist_wheel

twine upload dist/*

deprecated: python setup.py sdist upload -r pypi

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

cgecore-2.0.1.tar.gz (236.7 kB view details)

Uploaded Source

Built Distribution

cgecore-2.0.1-py3-none-any.whl (271.8 kB view details)

Uploaded Python 3

File details

Details for the file cgecore-2.0.1.tar.gz.

File metadata

  • Download URL: cgecore-2.0.1.tar.gz
  • Upload date:
  • Size: 236.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.1 CPython/3.11.1

File hashes

Hashes for cgecore-2.0.1.tar.gz
Algorithm Hash digest
SHA256 1154efd945622e0282284015815c7d186820262875cec1b80d333585d4170ec4
MD5 c769e5e4817e878da81cd73db00173b7
BLAKE2b-256 53e74e7d34ebe30a7f2e1adecf908ae7e459c8aad37d5a9224775ca5d1f7a3a8

See more details on using hashes here.

File details

Details for the file cgecore-2.0.1-py3-none-any.whl.

File metadata

  • Download URL: cgecore-2.0.1-py3-none-any.whl
  • Upload date:
  • Size: 271.8 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.1 CPython/3.11.1

File hashes

Hashes for cgecore-2.0.1-py3-none-any.whl
Algorithm Hash digest
SHA256 ebe5783936b174b95b1c24463518a44fe9c5529b49dfdd9c1d1400e874bf3118
MD5 b5b1780120041b4ea6da09b89c9e12d4
BLAKE2b-256 eba6189fc91a85d1bdb8f01f8b99860ef83e85b04870adb11fb567e463100701

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page