Pre-release
This release is a pre-release and may not be stable for production use.
chame is a Python module to work with genomic ranges and chromatin accessibility.
Part of scverse.
Install chame
pip install git+https://github.com/gtca/chame
Functionality
I/O
10X Genomics ARC, SnapATAC, ArchR (arrow files).
Preprocessing and QC
TF-IDF / LSI. TSS enrichment, mono-nucleosome occupancy, etc.
Plotting
Joint gene + peak visualisation.
Other projects
1 maintainer
Metadata
1 maintainer
Release files for chame 0.0.1.dev0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| chame-0.0.1.dev0.tar.gz | 3.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| chame-0.0.1.dev0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 7.9 kB
Release files / chame-0.0.1.dev0.tar.gz
| Download URL | chame-0.0.1.dev0.tar.gz |
|---|---|
| Size | 3.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/3.4.1 importlib_metadata/4.3.0 pkginfo/1.5.0.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.59.0 CPython/3.8.13
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Release files / chame-0.0.1.dev0-py3-none-any.whl
| Download URL | chame-0.0.1.dev0-py3-none-any.whl |
|---|---|
| Size | 4.3 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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twine/3.4.1 importlib_metadata/4.3.0 pkginfo/1.5.0.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.59.0 CPython/3.8.13
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