chapter-mcp 0.1.1

A structure-aware chapter search MCP server.

chapter-mcp

chapter-mcp gives coding agents a compact way to search a project by useful sections instead of opening whole files.

It indexes a workspace locally, splits files into "chapters", and exposes MCP tools for searching, listing, and reading those chapters. The goal is simple: help an assistant find the right part of a repo before it burns context on raw file reads.

It is intentionally boring in a good way: local SQLite FTS5, deterministic full-text search, no embeddings, no vector database, and no external service.

What it is good for

Use chapter-mcp when an assistant needs project context but does not yet know which file or section matters. Good fits:

• project README sections
• AGENTS.md, CLAUDE.md, instructions, and local notes
• ADRs and design docs
• Markdown/TXT documentation
• source files where top-level classes or functions make useful chapters
• focused reads after a search result points to the right line range

Not a good fit:

• exact code matching with punctuation, operators, routes, or config keys
• symbol references, definitions, diagnostics, or safe edits
• fuzzy semantic search across very different wording

For those, keep using the sharper tool: rg for exact text, Serena or another language-aware tool for symbols, raw file reads for known ranges, and vector/RAG tooling for real semantic retrieval.

How chapters work

chapter-mcp turns files into smaller units: Markdown by headings, Python by top-level classes/functions, and other text files by paragraphs. Search results point to chapter names and line ranges. Reads can return a whole chapter or a limited slice of chapter content.

By default, if no explicit config is provided, chapter-mcp discovers visible top-level project entries and indexes them. In a Git repo it uses tracked files, skips hidden top-level entries and .chapter-mcp, respects .gitignore, and applies .aiignore rules.

That means the happy path is: add the MCP server to your assistant, start the assistant in a repo, and let discovery do the first pass.

Install

chapter-mcp is available on PyPI. The quickest way to run it is with uvx:

uvx chapter-mcp --root .

For a persistent install, use:

uv tool install chapter-mcp

or:

pip install chapter-mcp

For local development from this checkout, see Development.

Use Case 1: Local Development Project

For a normal local project, do not start chapter-mcp manually in a terminal. Add it to the MCP config for the assistant you use in that project.

When the assistant starts the server, chapter-mcp indexes the project root automatically unless you override it. No project config is required for the first run.

Codex

Add a project-local Codex MCP entry, for example in .codex/config.toml:

[mcp_servers.chapter-mcp]
command = "uvx"
args = ["chapter-mcp", "--root", "."]
cwd = "."
startup_timeout_sec = 20
required = false

Then add instructions in AGENTS.md so Codex actually reaches for the tool:

## Project context

Use `chapter-mcp` before broad file reads when looking for project docs,
instructions, README sections, ADRs, or chapterized source sections.

Prefer this flow:
1. Search with `chapter-mcp` to find the relevant section.
2. Read the matching chapter or a small slice of it.
3. Use Serena for symbol definitions, references, diagnostics, and safe edits.
4. For literal code/config queries, pass `exact_code_matches=true` to
   `search` or `read_search`.
5. Use `rg` when you need exhaustive exact matching, absence checks, or
   verification after edits.

Use `chapter-mcp` for discovery and focused reads. Use `rg` as the final source
of truth for repo-wide exact matching.

Claude Code

For Claude Code, add a project .mcp.json:

{
  "mcpServers": {
    "chapter-mcp": {
      "command": "uvx",
      "args": ["chapter-mcp", "--root", "${CLAUDE_PROJECT_DIR:-.}"]
    }
  }
}

Or add it through Claude's MCP command:

claude mcp add-json chapter-mcp '{"command":"uvx","args":["chapter-mcp","--root","${CLAUDE_PROJECT_DIR:-.}"]}'

Then add instructions in CLAUDE.md:

## Project context

Use the `chapter-mcp` MCP server before reading large files. It is best for
finding relevant README sections, docs, local instructions, ADRs, and
chapterized source sections.

Use `chapter-mcp` for discovery and focused chapter reads. Use normal file
reads only after the relevant file or line range is known.

For literal code/config queries, pass `exact_code_matches=true` to `search` or
`read_search`. Use exact search tools such as `rg` for exhaustive repo-wide
matching, absence checks, and verification after edits. Use language-aware tools
for symbols.

Optional project config

Auto-discovery is the default. Add .chapter-mcp/config.json only when you want to pin categories, exclude noisy top-level folders, or index a specific set of paths:

{
  "paths": [
    "docs=docs",
    "src=src",
    "tests=tests",
    "readme=README.md"
  ]
}

Supported config fields are root, db, paths, watch, watch_interval, and sync_startup. paths is required when using config. CLI flags override project config when both are present.

Useful server flags:

chapter-mcp --root .
chapter-mcp --root . --path docs --path src
chapter-mcp --root . --path knowledge=.serena/memories
chapter-mcp --root . --no-watch
chapter-mcp --root . --no-sync-startup
chapter-mcp --root . --watch-interval 0.5

Use Case 2: Assistants and Agents

The agent use case is similar, but the emphasis is different: chapter-mcp becomes a context-routing layer. When a task starts vague, the first move can be a small search over indexed chapters instead of a broad file read.

Recommended flow:

1. Search local instructions and docs with chapter-mcp.
2. Read the best chapter with read_search(..., content_limit=40) or read_chapter(..., content_limit=40).
3. Switch to symbol tools if the task becomes code-aware.
4. Use rg for exact verification.
5. If you know a file and line, try read_chapter_at before a raw range read.
6. Use raw reads only after the path and range are clear.

This is especially useful when pairing chapter-mcp with tools such as Serena:

• chapter-mcp answers "which section should I inspect?"
• Serena answers "which symbol is this, and who references it?"
• rg answers "where does this exact text occur?"
• raw reads answer "what is the exact source in this known range?"

Minimal agent instruction block

If you only want a small instruction, this is enough:

Use `chapter-mcp` before broad file reads for indexed project context:
README sections, docs, instructions, ADRs, Markdown/TXT files, and chapterized
source sections.

Use `read_chapter` with `content_limit` for focused reads. Use `rg` for exact
literals and Serena/language tools for symbols and references. If you want code
or config hits to contain the raw query exactly, pass `exact_code_matches=true`
to `search` or `read_search`. If you know a file and approximate line, use
`read_chapter_at` before reading a raw line range.

Compared with file-read-mcp

file-read-mcp is useful when the assistant already knows the file or range it needs. It is direct and close to the filesystem.

chapter-mcp is useful one step earlier. It helps the assistant discover the right section before choosing what to read.

In practice:

• use chapter-mcp to search and shortlist relevant sections
• use read_chapter to inspect the matching chapter without flooding context
• use file-read-mcp, sed, or editor reads for exact raw ranges

The distinction is small but important. file-read-mcp is about access. chapter-mcp is about choosing what is worth accessing.

MCP tools

The server exposes search, search_chapter, read_search, read_chapter_at, read_chapter, list_chapters, list_chapters_as_columns, list_files, stats, and reindex.

search and read_search also accept exact_code_matches=false. When set to true, docs keep normal FTS behavior, but code/config chapters must contain the raw query as an exact substring.

read_search, read_chapter_at, and read_chapter accept content_limit for small first reads. read_chapter_at is useful when the alternative would be a raw line-range read and you want the indexed chapter around that line first.

Example calls:

stats()
list_files()
search("config handling", limit=3, include_snippet=True)
search("extract-codex-session", exact_code_matches=True)
search_chapter("Style guide", category="docs", limit=3)
read_search("config handling", category="docs", content_limit=40)
read_chapter_at(file="docs/style-guide.md", line=25, content_limit=40)
read_chapter("Style guide", file="docs/style-guide.md", content_limit=40)
list_chapters_as_columns(fields=["name"])

Benchmark basics

chapter-mcp does not measure savings inside the server. The benchmark helper summarizes observed tool traffic from outside the server so you can compare a baseline run with a chapter-first run.

For Codex sessions, extract a neutral JSONL log from the latest session:

uv run chapter-mcp benchmark extract-codex-session --out baseline.jsonl

Or pass a specific session log:

uv run chapter-mcp benchmark extract-codex-session \
  ~/.codex/sessions/2026/05/25/example.jsonl \
  --out chapter-first.jsonl

Summarize one run:

uv run chapter-mcp benchmark summarize baseline.jsonl

Compare two runs:

uv run chapter-mcp benchmark compare baseline.jsonl chapter-first.jsonl

The input format is deliberately simple JSONL:

{"tool":"sed","cmd":"rtk sed -n '1,220p' src/foo.py","chars_out":12340,"lines_out":220}
{"tool":"rg","cmd":"rtk rg column src","chars_out":1840,"lines_out":35}
{"tool":"chapter-mcp","call_name":"search","chars_out":2300,"lines_out":40}

Required fields are tool and chars_out. Optional fields include bytes_out, lines_out, cmd, path, range, and timestamp.

The report is meant as a rough comparison, not a scientific token meter. It is most useful for spotting repeated broad reads and checking whether chapter-first workflows reduce raw file output.

Limits

chapter-mcp is full-text search, not semantic search. Literal wording matters. If users ask fuzzy conceptual questions and the source uses very different phrasing, use a vector or RAG tool instead.

It is also not an exact source-code matcher. SQLite FTS tokenization is not the right tool for punctuation-heavy code, operators, or paths. Use rg for that.

The intended tradeoff is narrow and practical: fast local chapter lookup that keeps an assistant oriented before it reaches for heavier tools.

Development

uv sync
uv run pytest