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Chemical Engineering Dataset Loader Library

Project description

CheLo (Chemical Engineering Dataset Loader) Library

Overview

The CheLo Library is a Python library designed to simplify the exploration of data-driven modeling for students studying chemical engineering and researchers working on related projects. This library provides a standardized framework for accessing, managing, and utilizing chemical engineering datasets for machine learning and statistical analysis.

Key Features

  • Dataset Standardization: Unified API for accessing and exploring datasets.
  • Multiple Data Formats: Provides ready to use loaders for numpy, PyTorch, and Keras.
  • Preprocessing Tools: Methods for feature/target selection, statistics, and previewing datasets.
  • Dataset Management: Automated downloading, caching, and registry of datasets.
  • Extensibility: Abstract base class for easy addition of new datasets.

Installation

To install the library, run the following command:

pip install chelo

To install the library in editable mode for development purposes:

git clone https://github.com/your-repo/chelo.git
cd chelo
pip install -e .

Package Structure

chelo/                   # Root package
├── __init__.py          # Exposes core components
├── base.py              # Abstract base class and shared utilities
├── datasets/            # Dataset-specific implementations
│   └── ...              # Dataset implementations
├── utils/               # Utility functions and helpers
│   ├── __init__.py      # Utility imports
│   └──  download.py      # Dataset downloader and caching
├── registry.py          # Dataset registry
└── tests/               # Unit and integration tests
    ├── __init__.py      # Makes this directory a package
    ├── test_base.py     # Tests for the base class
    └── test_X.py        # Tests for X dataset

Usage Guide

Loading a Dataset

from chelo.datasets.wine_quality import WineQualityDataset

# Instantiate the dataset
dataset = WineQualityDataset(wine_type="red", selected_features=["alcohol", "pH"], selected_targets=["quality"])

# Load data (downloads if not cached)
dataset.load_data()

# Access dataset information
info = dataset.get_dataset_info()
print("Dataset Info:", info)

Accessing Data

# Convert to numpy arrays
features, targets = dataset.to_numpy()
print("Features shape:", features.shape)
print("Targets shape:", targets.shape)

# Convert to PyTorch Dataset
pytorch_dataset = dataset.to_pytorch()
print("Number of samples in PyTorch Dataset:", len(pytorch_dataset))

# Convert to Keras Sequence
keras_sequence = dataset.to_keras(batch_size=32)
for batch_features, batch_targets in keras_sequence:
    print("Batch Features:", batch_features.shape)
    print("Batch Targets:", batch_targets.shape)

Dataset Statistics and Preview

# Get basic statistics
stats = dataset.statistics()
print("Statistics:", stats)

# Preview the dataset
preview = dataset.preview(n=5)
print("Preview:", preview)

Registering and Accessing Datasets

from chelo.registry import DatasetRegistry

# List available datasets
print("Available Datasets:", DatasetRegistry.list_datasets())

# Retrieve and load a dataset by name
dataset = DatasetRegistry.get_dataset("WineQualityDataset", wine_type="red")
dataset.load_data()

Extending the Library

To add a new dataset, create a new class that inherits from ChemicalEngineeringDataset and implement the required methods:

  1. Create a new dataset module:
chelo/datasets/my_new_dataset.py
  1. Implement the dataset class:
from ..base import ChemicalEngineeringDataset

class MyNewDataset(ChemicalEngineeringDataset):
    def __init__(self, selected_features=None, selected_targets=None):
        super().__init__(selected_features, selected_targets)
        self.dataset_name = "My New Dataset"

    def load_data(self):
        # Load dataset into self.raw_features and self.raw_targets
        pass

    def list_features(self):
        return list(self.raw_features.keys())

    def list_targets(self):
        return list(self.raw_targets.keys())

    def get_dataset_info(self):
        return {"name": self.dataset_name, "description": "Description of the dataset."}
  1. Register the dataset:

Add the following line to chelo/datasets/__init__.py:

from .my_new_dataset import MyNewDataset
DatasetRegistry.register(MyNewDataset)

Advanced Features

Downloader Utility

The library includes a downloader utility for downloading and caching datasets. Files are stored in a structured cache directory (default: ~/.chelo).

Example Usage

from chelo.utils.download import DatasetDownloader

downloader = DatasetDownloader()

# Download a dataset file
url = "https://example.com/dataset.csv"
file_path = downloader.download(url, dataset_name="example_dataset", filename="example.csv")
print("Downloaded file path:", file_path)

Dataset Registry

The registry dynamically manages available datasets, allowing users to list and retrieve datasets by name.

Example Usage

from chelo.registry import DatasetRegistry

# List all registered datasets
print("Available Datasets:", DatasetRegistry.list_datasets())

# Retrieve a dataset by name
dataset = DatasetRegistry.get_dataset("WineQualityDataset", wine_type="white")

Testing

The library includes comprehensive unit tests to ensure correctness and reliability. Run tests using pytest:

pytest tests/

Contributing

Contributions are welcome! To contribute:

  1. Fork the repository.
  2. Create a feature branch.
  3. Implement your changes and add tests.
  4. Submit a pull request with a detailed description of your changes.

License

This library is licensed under the MIT License. See the LICENSE file for more details.

Contact

For questions or feedback, please contact [your email or project contact].

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