ChemDataExtractor
ChemDataExtractor v2 is a toolkit for extracting chemical information from the scientific literature. Python 3.9 to Python 3.11 supported.
Installation
Create a virtual environment, for example with conda
conda create -n cde2 python=3.11
Activate the cde2 environment
conda activate cde2
Install chemdataextractor2 with pip
pip install chemdataextractor2
Features
- HTML, XML and PDF document readers
- Chemistry-aware natural language processing pipeline
- Chemical named entity recognition
- Rule-based parsing grammars for property and spectra extraction
- Table parser for extracting tabulated data
- Document processing to resolve data interdependencies
Documentation & Development
Please read the documentation for instructions on contributing to the project.
License
ChemDataExtractor v2 is licensed under the MIT license_, a permissive, business-friendly license for open source
software.
MIT license: https://github.com/CambridgeMolecularEngineering/ChemDataExtractor/blob/master/LICENSE
2 maintainers
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