Easy management of ChIP-seq peak calling
Project description
chipseqpeaks
Easy management of ChIP-seq peak calling data
A mini-module for managing ChIP-seq peak calling data. The language of this module treats "ChIP-seq peaks" as an abstraction, but mostly handles them as MACS2 output stored in memory.
Example
-------
import chipseqpeaks
with chipseqpeaks.ChIPSeqPeaks(<bytes object or path to BAM file>) as cp:
cp.cleans_up = False
cp.remove_blacklisted_peaks(<path/to/blacklist.bed>)
cp.write(<output prefix>)
Classes
-------
ChIPSeqPeaks
object representing ChIP-seq peaks
Functions
---------
parse_input
check that an input is str or bytes and return the bam file as a bytes
object
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