chord 0.0.12

Python wrapper around d3-chord

Introduction

In a chord diagram (or radial network), entities are arranged radially as segments with their relationships visualised by arcs that connect them. The size of the segments illustrates the numerical proportions, whilst the size of the arc illustrates the significance of the relationships¹.

Chord diagrams are useful when trying to convey relationships between different entities, and they can be beautiful and eye-catching.

The Chord Package

I wanted to do a section on Chord Diagrams for my book, Data Is Beautiful.

With Python in mind, there are many libraries available for creating Chord diagrams, such as Plotly, Bokeh, and a few that are lesser-known. However, I wanted to use the implementation from d3 because it can be customised to be highly interactive and to look beautiful.

I couldn't find anything that ticked all the boxes, so I made a wrapper around d3-chord myself. It took some time to get it working, but I wanted to hide away everything behind a single constructor and method call. The tricky part was enabling multiple chord diagrams on the same page, and then loading resources in a way that would support Jupyter Lab.

The primary support is for Jupyter Lab (not the older Jupyter Notebook).

Installation

Available on https://pypi.org/chord through pip:

pip install chord

Usage

Python

Python (HTML file)

Chord(matrix, names).to_html()

Jupyter Lab (Notebook)

Chord(matrix, names).show()

Defaults

Chord(self,
        matrix,
        names,
        colors="d3.schemeSet1",
        opacity=0.8,
        padding=0.01,
        width=700,
        label_color="#454545",
        wrap_labels=True,
        margin=0,
        credit=False,
    )

Examples

You can see the actual interactive examples on this page. The below examples are screenshots.

The Dataset

The focus for this section will be the demonstration of the chord package. To keep it simple, we will use synthetic data that illustrates the co-occurrences between movie genres within the same movie.

matrix = [
    [0, 5, 6, 4, 7, 4],
    [5, 0, 5, 4, 6, 5],
    [6, 5, 0, 4, 5, 5],
    [4, 4, 4, 0, 5, 5],
    [7, 6, 5, 5, 0, 4],
    [4, 5, 5, 5, 4, 0],
]

names = ["Action", "Adventure", "Comedy", "Drama", "Fantasy", "Thriller"]

Default Settings

Let's see what the Chord() defaults produce when we invoke the show() method.

Chord(matrix, names).show()

You can also save it to a HTML file.

Chord(matrix, names).to_html()

Different Colours

The defaults are nice, but what if we want different colours? You can pass in almost anything from d3-scale-chromatic, or you could pass in a list of hexadecimal colour codes.

Chord(matrix, names, colors="d3.schemeSet2").show()

Chord(matrix, names, colors=f"d3.schemeGnBu[{len(names)}]").show()

Chord(matrix, names, colors="d3.schemeSet3").show()

Chord(matrix, names, colors=f"d3.schemePuRd[{len(names)}]").show()

Chord(matrix, names, colors=f"d3.schemeYlGnBu[{len(names)}]").show()

hex_colours = ["#222222", "#333333", "#4c4c4c", "#666666", "#848484", "#9a9a9a"]

Chord(matrix, names, colors=hex_colours).show()

Label Styling

We can disable the wrapped labels, and even change the colour.

Chord(matrix, names, wrap_labels=False, label_color="#4c40bf").show()

Opacity

We can also change the default opacity of the relationships.

Chord(matrix, names, opacity=0.1).show()

Diagram Size

We can change the maximum diagram size by specifying a width.

Chord(matrix, names, width=400).show()

We can change the padding between chord segments by specifying the padding.

Chord(matrix, names, padding=0.3).show()

---

1. Tintarev, N., Rostami, S., & Smyth, B. (2018, April). Knowing the unknown: visualising consumption blind-spots in recommender systems. In Proceedings of the 33rd Annual ACM Symposium on Applied Computing (pp. 1396-1399). ↩

Credits

• d3-chord, Mike Bostock.
• d3-chord gradient fills, Nadieh Bremer.
• chord (Python), Shahin Rostami.