Skip to main content

A pipeline used to vizualize and analyze clarity treated brain images.

Project description

# clviz

[![](]( [![Build Status](](

clviz is a Python 2 package for Clarity brain analysis. It supports ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC.

## Installation

To install the prerequisite packages, clone the directory using: ` git clone cd clviz pip install -r requirements.txt `

Afterwards install opencv. This is easily accomplishable if you have brew or conda by using either
` brew install opencv ` or ` conda install opencv ` If not, install opencv by following their build instruction here:

After installing the prerequisites there’s two options for using clviz. You can use clviz as a standalone package and perform basic analysis on your own files, or you can install ndreg and ndio and use clviz as a powerful integrating tool for graph-based analysis.

` pip install clarityviz `

## Docker Installation ` docker pull lkzhu1/ubuntu:prototype1 docker run -t -i lkzhu1/ubuntu:prototype1 `

## Getting Started

In development but tutorials will be uploaded shortly!

## Documentation

Complete documentation is located at

## Credits

Credit to installation script in .travis.yml goes to

Project details

Release history Release notifications

This version
History Node


History Node


History Node


History Node


History Node


History Node


History Node


History Node


History Node


History Node


History Node


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
clarityviz-0.1.7.tar.gz (26.7 kB) Copy SHA256 hash SHA256 Source None May 16, 2017

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging CloudAMQP CloudAMQP RabbitMQ AWS AWS Cloud computing Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page