clincalc (Python)

Python bindings for the clincalc Rust engine - open, auditable clinical calculators.

Install

clincalc supports CPython 3.9 and later.

python -m pip install clincalc

With pandas support for batch computation:

python -m pip install "clincalc[pandas]"

Quick start

import clincalc

# Calculate BMI
result = clincalc.calculate("bmi", {"weight_kg": 70, "height_cm": 175})
assert result["result"] == 22.9
print(result["calculator"], result["result"])
# bmi 22.9

# Discover available calculators
print([c["name"] for c in clincalc.list_calculators()])

# Inspect a calculator's input schema
print(clincalc.get_schema("egfr"))

# Get a fillable input template
print(clincalc.get_template("egfr"))

You can verify the installation directly from a terminal:

python -c "import clincalc; result = clincalc.calculate('bmi', {'weight_kg': 70, 'height_cm': 175}); print(result['result'])"

The command prints 22.9.

Pandas batch helper

import pandas as pd
import clincalc

patients = pd.DataFrame({
    "weight_kg": [70, 90],
    "height_cm": [175, 180],
})
results = clincalc.batch("bmi", patients)
print(results[["result", "interpretation"]])

When the DataFrame column names differ from the calculator field names, pass a mapping:

patients = pd.DataFrame({"weight": [70], "height": [175]})
results = clincalc.batch(
    "bmi",
    patients,
    input_columns={"weight_kg": "weight", "height_cm": "height"},
)

License

Original clincalc code is licensed under AGPL-3.0-or-later. The QRISK3 and QFracture modules retain ClinRisk's LGPL-3.0-or-later licence. Wheels and source distributions include the applicable licence texts and third-party notices.

The ASRS-v1.1 six-question scorer accepts coded adult responses covering the past six months from the authorised form, reports the classic dichotomous and alternative continuous methods separately, and carries the required attribution to New York University and the President and Fellows of Harvard College in every result. Current source and releases from 0.3.0 onward do not distribute questionnaire text or the separately licensed 18-question checklist; legacy 0.2.2 source artifacts did include the checklist and should not be used.

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clincalc 0.3.4

clincalc (Python)

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