clincalc (Python)
Python bindings for the clincalc Rust engine - open, auditable clinical calculators.
Install
clincalc supports CPython 3.9 and later.
python -m pip install clincalc
With pandas support for batch computation:
python -m pip install "clincalc[pandas]"
Quick start
import clincalc
# Calculate BMI
result = clincalc.calculate("bmi", {"weight_kg": 70, "height_cm": 175})
assert result["result"] == 22.9
print(result["calculator"], result["result"])
# bmi 22.9
# Discover available calculators
print([c["name"] for c in clincalc.list_calculators()])
# Inspect a calculator's input schema
print(clincalc.get_schema("egfr"))
# Get a fillable input template
print(clincalc.get_template("egfr"))
You can verify the installation directly from a terminal:
python -c "import clincalc; result = clincalc.calculate('bmi', {'weight_kg': 70, 'height_cm': 175}); print(result['result'])"
The command prints 22.9.
Pandas batch helper
import pandas as pd
import clincalc
patients = pd.DataFrame({
"weight_kg": [70, 90],
"height_cm": [175, 180],
})
results = clincalc.batch("bmi", patients)
print(results[["result", "interpretation"]])
When the DataFrame column names differ from the calculator field names, pass a mapping:
patients = pd.DataFrame({"weight": [70], "height": [175]})
results = clincalc.batch(
"bmi",
patients,
input_columns={"weight_kg": "weight", "height_cm": "height"},
)
License
Original clincalc code is licensed under AGPL-3.0-or-later. The QRISK3 and QFracture modules retain ClinRisk's LGPL-3.0-or-later licence. Wheels and source distributions include the applicable licence texts and third-party notices.
The ASRS-v1.1 six-question scorer accepts coded adult responses covering the past six months from the authorised form, reports the classic dichotomous and alternative continuous methods separately, and carries the required attribution to New York University and the President and Fellows of Harvard College in every result. Current source and releases from 0.3.0 onward do not distribute questionnaire text or the separately licensed 18-question checklist; legacy 0.2.2 source artifacts did include the checklist and should not be used.
1 maintainer
Metadata
1 maintainer
Release files for clincalc 0.4.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| clincalc-0.4.0.tar.gz | 834.8 kB | With provenance | Details for clincalc-0.4.0.tar.gz |
Built distributions (wheels)
| File | Actions Reset | |||
|---|---|---|---|---|
| clincalc-0.4.0-cp39-abi3-win_amd64.whl | CPython 3.9 | abi3 | Windows x86-64 | Details for clincalc-0.4.0-cp39-abi3-win_amd64.whl |
| clincalc-0.4.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl | CPython 3.9 | abi3 | Linux glibc 2.17+ x86-64 | Details for clincalc-0.4.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
| clincalc-0.4.0-cp39-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl | CPython 3.9 | abi3 | Linux glibc 2.17+ ARM64 | Details for clincalc-0.4.0-cp39-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl |
| clincalc-0.4.0-cp39-abi3-macosx_11_0_arm64.whl | CPython 3.9 | abi3 | macOS 11.0+ ARM64 | Details for clincalc-0.4.0-cp39-abi3-macosx_11_0_arm64.whl |
| clincalc-0.4.0-cp39-abi3-macosx_10_12_x86_64.whl | CPython 3.9 | abi3 | macOS 10.12+ x86-64 | Details for clincalc-0.4.0-cp39-abi3-macosx_10_12_x86_64.whl |
Total release size: 10.4 MB
Release files / clincalc-0.4.0.tar.gz
| Download URL | clincalc-0.4.0.tar.gz |
|---|---|
| Size | 834.8 kB |
| Tags | Source |
|
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|
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