3D printable CNVpytor logo (stl file)
CNVpytor - a python extension of CNVnator
CNVpytor is a Python package and command line tool for CNV/CNA analysis from depth-of-coverage by mapped reads developed in Abyzov Lab, Mayo Clinic.
Follow CNVpytor Twitter account.
Citing CNVpytor
CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing
Milovan Suvakov, Arijit Panda, Colin Diesh, Ian Holmes, Alexej Abyzov, GigaScience, Volume 10, Issue 11, November 2021, giab074
https://doi.org/10.1093/gigascience/giab074
Learn how to use CNVpytor in 10 minutes
- Geting started with command line interface
- Jupyter notebook: How to use CNVpytor from Python
- Google Colab: With CEPH trio example dataset
- Video Tutorial: 3-minute YT demo
Gallery
| Manhattan plot (see example) | Circular plot (see example) |
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| Region plot (see example) | Compare regions (see example) |
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| Merging and annotating calls (see example) | Call somatic CNAs (see example) |
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Install
> pip install cnvpytor
> cnvpytor -download
Using
Check CNVpytor github page.
License
Released under MIT licence.
Release files for CNVpytor 1.3.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| CNVpytor-1.3.2.tar.gz | 1.1 MB | Without provenance | Details for CNVpytor-1.3.2.tar.gz |
Release files / CNVpytor-1.3.2.tar.gz
| Download URL | CNVpytor-1.3.2.tar.gz |
|---|---|
| Size | 1.1 MB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
00822f25a69b12ad53e96bf2d7f1c52cbc9d09d55b3d4ff82f5dd331dfc78c56
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BLAKE2b-256 checksum How to use checksums |
3be5e6e153917ce5f6327bc5f7c1558435d57ef840c5ef9b4a4506ea09c0ccc0
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.4
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Security for CNVpytor 1.3.2
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