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SQLAlchemy ORM and pydantic data models for SQL storage and JSON serialization of COBRA components such as reactions, compounds, and compartments.

Project description

Current PyPI Version Supported Python Versions Apache Software License Version 2.0 Code of Conduct Travis CI Codecov Black Documentation Status

Provide SQLAlchemy ORM and pydantic data models for SQL storage and serialization of COBRA components such as reactions, compounds, and compartments. They are loosely modeled after corresponding classes from the SBML Level 3 Version 2 specification. The data models are primarily intended for web services but other applications may benefit from these, too.

Install

It’s as simple as:

pip install cobra-component-models

Usage

For now please take a look at the various class definitions and test cases to understand how to use the provided models.

Project details


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