SQLAlchemy ORM and pydantic data models for SQL storage and JSON serialization of COBRA components such as reactions, compounds, and compartments.
Project description
Provide SQLAlchemy ORM and pydantic data models for SQL storage and serialization of COBRA components such as reactions, compounds, and compartments. They are loosely modeled after corresponding classes from the SBML Level 3 Version 2 specification. The data models are primarily intended for web services but other applications may benefit from these, too.
Install
It’s as simple as:
pip install cobra-component-modelsUsage
For now please take a look at the various class definitions and test cases to understand how to use the provided models.
Copyright
Copyright © 2019, Moritz E. Beber.
Copyright © 2018-2019, Institute for Molecular Systems Biology, ETH Zurich.
Copyright © 2018-2019, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark.
Free software distributed under the Apache Software License 2.0.
Parts of the included codebase are licensed under the MIT license.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file cobra-component-models-0.6.0.tar.gz.
File metadata
- Download URL: cobra-component-models-0.6.0.tar.gz
- Upload date:
- Size: 19.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.0 CPython/3.8.10
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
41d4e7552000d18945e506e214fd95d70edb34be4147e17dfbba8f335df263e4
|
|
| MD5 |
bce1dbeb435ff52d66d5a623a1228a73
|
|
| BLAKE2b-256 |
a68c678bf42f275e0989be32f7cfa5fde1f06e627904e7955bf7d18dfe803b50
|
File details
Details for the file cobra_component_models-0.6.0-py3-none-any.whl.
File metadata
- Download URL: cobra_component_models-0.6.0-py3-none-any.whl
- Upload date:
- Size: 43.2 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.0 CPython/3.8.10
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
55591b1f8848d2568b984b472e968cf5bb498409f6c156543e1f20eede154c75
|
|
| MD5 |
8e45623db7701ce2c3edad05a2e2328f
|
|
| BLAKE2b-256 |
69e511eed8fe3448d2a7ba77ad2fc923af29928e926fc0291b172e307f0b59df
|
