cogent3_pykmertools: kmer counting plugins for cogent3
Installation
We recommend installing cogent3_pykmertools from PyPI as follows
pip install cogent3_pykmertools
Or using uv
uv pip install cogent3_pykmertools
The installation process registers the apps and plugins with cogent3.
The provided apps
pkt_count_kmers(): does what the name says! When this package is installed, this app will be used by thecogent3Sequence.count_kmers()andSequenceCollection.count_kmers()methods. This app can also be run in parallel, which can be useful if you have a lot of sequences in theSequenceCollection.pkt_kmer_header: returns the k-mers as strings, so you know what their order is.
Getting help on the apps
Use the cogent3.app_help() function. For example, cogent3.app_help("pkt_count_kmers").
1 maintainer
Metadata
1 maintainer
Release files for cogent3-pykmertools 0.2.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| cogent3_pykmertools-0.2.2.tar.gz | 14.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| cogent3_pykmertools-0.2.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 29.5 kB
Release files / cogent3_pykmertools-0.2.2.tar.gz
| Download URL | cogent3_pykmertools-0.2.2.tar.gz |
|---|---|
| Size | 14.3 kB |
| Tags | Source |
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Transparency logRelease files / cogent3_pykmertools-0.2.2-py3-none-any.whl
| Download URL | cogent3_pykmertools-0.2.2-py3-none-any.whl |
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| Size | 15.2 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
|
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