coimbra-chamber 0.0.8

Python programs for Rich Inman's PhD work involving the Coimbra Chamber at UCSD.

Table of Contents

• Description

• Installation

• Getting Started

• Python Version

• MySQL Database

• Preferred Way to Run Tests

• Images

Description

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Description will go here.

Installation

Run the following to install:

$ pip install coimbra_chamber

Getting Started

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We must configure our database before running any analysis:

First, we must decide if we want to use an in-memory SQLite database or point to an instance of a MySQL database. Then we need to create a config file in our working directory to reflect our configuration.

Create a copy of the file example-config.ini from the repository and rename it to config.ini. Move the config.ini file that we just created into your working directory and open the file. Change database_type to memory if we chose an in-memory database above. Otherwise, leave the database_type as MySQL and replace the host, user, and password fields with the host, username, and password for MySQL database we choose.

Then, to run an analysis:

>>> import coimbra_chamber as cc
>>> manager = cc.DataManager()
>>> manager.run()

Follow the prompts in the terminal to complete your analysis.

Python Version

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This module is intended to use Python 3.6. and above.

MySQL Database

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NOTE: In order to run the integration tests, a local version of mySQL must be installed and running.

On OSX you can run the following line to start the mySQL service after installing from LINK

$ sudo launchctl load -F /Library/LaunchDaemons/com.oracle.oss.mysql.mysqld.plist

Stopping the mySQL service:

$ sudo launchctl unload -F /Library/LaunchDaemons/com.oracle.oss.mysql.mysqld.plist

Preferred Way to Run Tests

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1. From the repo directory; i.e., coimbra_chamber .. code-block:: bash

$ python -m pytest tests -xv –cov=coimbra_chamber –cov-report html tests

The above line requires both pytest and pytest-cov are installed.

Images

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