comptg2

A telomeric allele comparison-scoring tool for output from Telogator2.

Installation

comptg2 can be installed from PyPI using the following command:

pip install comptg2

Usage

The following is an example showing how comptg2 is to be used:

comptg2 compare ./sample_01_child.tsv ./sample_02_parent_1.tsv ./out.tsv

The output matrix can then be plotted using the following command:

comptg2 plot ./out.tsv

Output Format

Definition: TVR = telomere variable region

The output is a TSV matrix with the TVR of the first sample (child) across the columns, and those of the second sample (parent) across the rows. Each entry in the matrix is a floating-point number between 0 and 1, representing a custom similarity score between the two TVRs.

Copyright Notice

comptg2 is a telomeric allele comparison-scoring tool for output from Telogator2.

Copyright (C) 2024 McGill University, David Lougheed

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see https://www.gnu.org/licenses/.