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Consenrich

Consenrich estimates regulatory signals from multi-sample functional genomics datasets.

Consenrich overview

Input: Sequencing data (BAM files, fragments, etc.) from ATAC-seq, DNase-seq, ChIP-seq, CUT&RUN, and other functional genomics assays where multiple samples or replicates measure a shared regulatory signal but differ in local noise, artifacts, sequencing depth, assay quality, or biological heterogeneity.

Output: Consensus signal estimate tracks (bedGraph, bigWig), associated uncertainty/background tracks (bedGraph, bigWig), and optional consensus peak calls (narrowPeak, gappedPeak, BED).

See the Documentation.

Manuscript Preprint and Citation

BibTeX Citation

@article {Hamilton2025,
	author = {Hamilton, Nolan H and Huang, Yu-Chen E and McMichael, Benjamin D and Love, Michael I and Furey, Terrence S},
	title = {Genome-Wide Uncertainty-Moderated Extraction of Signal Annotations from Multi-Sample Functional Genomics Data},
	year = {2025},
	doi = {10.1101/2025.02.05.636702},
	publisher = {Cold Spring Harbor Laboratory},
	journal = {bioRxiv}
}

Project links

Data verified by PyPI on Sep 2, 2026
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Key dates

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  • Released:
Newer release available (0.11.6a2)

1 maintainer

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Avatar for nolan-h-hamilton from gravatar.com nolan-h-hamilton

Credits

Author: Nolan H. Hamilton

GitHub Statistics

Data verified by PyPI on Sep 2, 2026
The GitHub source repository was provided by the project maintainers and verified by PyPI at the time of upload. Stars, forks, and open issues/PRs are derived from that repository and have not been independently verified.

License expression

MIT
View SPDX License List

Requires

Python >=3.11

Provides Extra

bigwig plots memory all

Classifiers

Report project as malware

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Release history Release notifications | RSS feed

Pre-release

0.11.6a2

25 files

Pre-release

0.11.6a1

25 files

This release
Pre-release

0.11.6a0 This release

25 files

Pre-release

0.11.5a0

25 files

Pre-release

0.11.2a0

25 files

Pre-release

0.11.0a0

25 files

Pre-release

0.10.5a0

25 files

Pre-release

0.10.3a0

25 files

Pre-release

0.10.2a0

25 files

Pre-release

0.10.0a0

25 files

Pre-release

0.9.5a1

13 files

Pre-release

0.9.3a1

13 files

Pre-release

0.9.3a0

13 files

Pre-release

0.9.2a0

13 files

Pre-release

0.9.1rc1

13 files

Pre-release

0.9.1rc0

13 files

Pre-release

0.9.0a1

13 files

Pre-release

0.9.0a0

13 files

Pre-release

0.8.9rc1

13 files

Pre-release

0.8.6rc1

13 files

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0.8.3rc1

13 files

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0.8.2rc2

13 files

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0.8.2rc1

13 files

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0.8.1rc1

13 files

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0.8.0rc2

13 files

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0.8.0rc1

13 files

Pre-release

0.7.23rc1

2 files

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0.7.22rc1

17 files

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0.7.17rc1

2 files

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0.7.16rc3

2 files

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0.7.16rc1

2 files

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0.7.13b3

2 files

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0.7.13b2

2 files

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0.7.13b1

2 files

Pre-release

0.7.11b2

17 files

Yanked

0.7.10rc6

2 files

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0.7.10rc5

2 files

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0.7.10rc4

2 files

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0.7.10rc3

2 files

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0.7.10rc2

2 files

Yanked

0.7.10rc1

2 files

Pre-release

0.7.9b2

17 files

Yanked

0.7.8rc5

2 files

Yanked reason: Keep beta as default install

Yanked

0.7.8rc4

2 files

Yanked reason: Keep beta as default

Yanked

0.7.8rc3

2 files

Yanked reason: Maintain beta release as default

Yanked

0.7.8rc1

2 files

Yanked reason: Keeps beta release as the default in the interim

Yanked

0.7.7rc2

2 files

Yanked reason: yanking so that the previous beta release remains the default install via pip

Yanked

0.7.7rc1

2 files

Yanked reason: yanking to keep beta release as default

Pre-release

0.7.7b1

17 files

Yanked

0.7.6rc3

2 files

Yanked

0.7.6rc2

2 files

Yanked reason: unstable release candidate

Yanked

0.7.6rc1

2 files

Pre-release

0.7.5b1

17 files

Pre-release

0.7.4b3

17 files

Pre-release

0.7.4b2

17 files

Pre-release

0.7.1b2

17 files

Pre-release

0.7.1b1

17 files

Pre-release

0.7.0b1

17 files

Pre-release

0.6.0b0

13 files

Pre-release

0.5.1b0

13 files

Pre-release

0.5.0b0

13 files

Pre-release

0.4.4b2

13 files

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0.4.4b0

13 files

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0.4.3b1

13 files

Pre-release

0.4.1b0

10 files

Pre-release

0.4.0b3

10 files

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0.4.0b1

10 files

Pre-release

0.4.0b0

10 files

Pre-release

0.2.0b2

10 files

Pre-release

0.2.0b1

7 files

Pre-release

0.2.0b0

7 files

Pre-release

0.1.13b1

2 files

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0.1.13b0

2 files

Pre-release

0.1.12b2

2 files

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0.1.12b1

2 files

Pre-release

0.1.12b0

2 files

Pre-release

0.1.11b0

2 files

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0.1.10b0

2 files

Pre-release

0.1.9b0

2 files

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0.1.8b1

2 files

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0.1.8b0

2 files

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0.1.7b1

2 files

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0.1.7b0

2 files

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0.1.1b0

2 files

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0.1.0b3

2 files

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0.1.0b2

2 files

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0.1.0b1

2 files

Pre-release

0.1.0b0

2 files

Pre-release

0.0.1b2

2 files

Pre-release

0.0.1b1

2 files

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