coregix 0.1.0

Elastix-based geospatial pairwise raster alignment

Coregix

Coregix provides elastix-based pairwise raster alignment for geospatial imagery.

Current scope:

• pairwise raster alignment CLI and Python API
• edge-proxy registration for structural cross-sensor alignment
• chunked transform application for large moving rasters
• optional postprocess trimming of invalid edge artifacts

Install

Conda environment

conda env create -f environment.yml
conda activate coregix

This installs the runtime stack and the package in editable mode.

Editable install into an existing environment

pip install -e .

The installed CLI entrypoint is:

vhr-align-image-pair --help

You can also run the module directly:

python -m coregix.cli.align_image_pair --help

CLI usage

Align a moving image to a fixed image

vhr-align-image-pair \
  --moving-image /path/to/moving.tif \
  --fixed-image /path/to/fixed.tif \
  --output-image /path/to/aligned.tif

By default this:

• registers on edge-proxy images
• writes the result on the moving-image grid
• uses no chunking (--split-factor 0)

Use chunking for large moving rasters

--split-factor controls chunked transform application as 2^k total chunks:

• 0: no split
• 1: halves
• 2: quadrants
• 3: octants

Example with quadrants:

vhr-align-image-pair \
  --moving-image /path/to/moving_large.tif \
  --fixed-image /path/to/fixed.tif \
  --output-image /path/to/aligned_large.tif \
  --split-factor 2

Remove invalid edge artifacts after alignment

--trim-edge-invalid runs a raster-space cleanup pass after alignment and sets edge artifacts to nodata.

Example:

vhr-align-image-pair \
  --moving-image /path/to/moving_large.tif \
  --fixed-image /path/to/fixed.tif \
  --output-image /path/to/aligned_large_edgefixed.tif \
  --split-factor 2 \
  --trim-edge-invalid \
  --edge-trim-depth 8 \
  --edge-trim-invalid-below -3000

The edge-trim thresholds are dataset-specific. --edge-trim-invalid-below is useful when interpolation artifacts are not equal to the dataset nodata value.

Python usage

Basic alignment

from coregix import align_image_pair

result = align_image_pair(
    moving_image_path="/path/to/moving.tif",
    fixed_image_path="/path/to/fixed.tif",
    output_image_path="/path/to/aligned.tif",
)

print(result.output_image_path)

Large raster with chunking and edge cleanup

from coregix import align_image_pair

result = align_image_pair(
    moving_image_path="/path/to/moving_large.tif",
    fixed_image_path="/path/to/fixed.tif",
    output_image_path="/path/to/aligned_large_edgefixed.tif",
    split_factor=2,
    trim_edge_invalid=True,
    edge_trim_depth=8,
    edge_trim_invalid_below=-3000,
)

print(result.output_image_path)

Notes

• split_factor changes only transform application, not the registration model.
• split_factor=2 is the direct replacement for the previous quadrant-based large-raster path.
• If needed, you can select separate registration bands with moving_band_index and fixed_band_index in Python or --moving-band-index and --fixed-band-index in the CLI.