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COREMat Framework

COREMat (COmputable REgression for Materials) is a Python framework for automated machine learning on tabular materials-science datasets — alloy research, materials-property prediction, and similar regression workloads. It automates the full workflow behind a single configuration: data ingestion, preprocessing, nested-CV training with hyperparameter optimisation, iterative feature selection, SHAP-based explainability, OOF/Hold-out evaluation, and interactive HTML reporting. The model registry ships 65 algorithm variants (gradient boosting, kernel methods, linear models, neural nets, foundation models) behind a unified ModelSpec interface.


What You Get

Every trained model gets a self-contained, interactive HTML report — open it in a browser, no server or notebook required. Excerpt of what's inside:

Section What it shows
Comparison Leaderboard All models in a run ranked by weighted Skill Score (OOF, switchable to Hold-out Test)
Actual vs. Predicted Square scatter with color-by-feature and linear/log axis toggle
Residuals & Error Distribution Residuals-vs-Predicted scatter, ECDF/histogram error analysis
Round Trajectory Feature-selection score and feature count per round
SHAP / Feature Importance Per-round SHAP summary plots and contribution bars
Model Parameters Curated hyperparameters and preprocessing policy

Every report is built post-hoc from persisted per-round predictions — re-opening a report never re-runs a model.


Installation

Requirements: Python >= 3.12, < 3.13

From PyPI (recommended — available from the first public release):

pip install coremat
# or with uv:
uv pip install coremat

From the Uni Rostock GitLab Registry (alternative, requires GitLab account):

uv pip install git+https://gitlab.uni-rostock.de/cs1302/coremat.git@main

Developers (editable install):

git clone https://gitlab.uni-rostock.de/cs1302/coremat.git
cd coremat
uv venv && uv sync
source .venv/bin/activate    # Linux/macOS
.venv\Scripts\activate       # Windows

TabPFN Authentication

TabPFN models require a free PriorLabs account. Set up once after installation:

coremat auth tabpfn

Getting Started

The documentation (mkdocs) is the single source of truth for usage — it covers the full quick-start walkthrough, sample data generation, and the resulting artifact layout. Start at docs/index.md or the Minimal Run guide.


Documentation

Document Description
docs/index.md Quick-start walkthrough and installation
docs/cli_guide.md Full CLI reference — all commands, options, and examples
docs/api.md Public API reference — exported symbols and usage
docs/reference/models/index.md All 35 registered models with preprocessing policies
docs/architecture.md Layer model, module responsibilities, dependency graph
docs/development.md Dev setup, reproducibility guide, contribution notes
docs/metrics.md Metric definitions and evaluation methodology
docs/verbose_levels.md Logging verbosity levels and output examples

Building the docs

uv add mkdocs mkdocs-material
uv run -m mkdocs serve                          # local preview at http://127.0.0.1:8000, live-reloads on edit
uv run -m mkdocs build --strict --site-dir /tmp/site  # artifact build; --strict turns broken links/nav into errors

The pages CI job runs the same --strict build as a documentation lint — GitLab Pages is not hosted on this instance, so nothing is deployed automatically. Publishing the built site/ output anywhere remains a manual step until a hosting target is chosen (see the CI/CD section in docs/development.md).


Citing COREMat

If you use COREMat in your research, please cite it. Machine-readable citation metadata is provided in CITATION.cff at the root of this repository.

Acknowledgements

This project was developed using an agentic AI-assisted workflow with Claude Code by Anthropic.

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