COnnectomics Registration Generalizable Inference Engine (corgie)
Welcome to corgie! corgie is a command line tool built for registration of very large 3D volumes.
Installation
pip install corgie
Example
corgie copy \
--src_layer_spec '{
"name": "unaligned",
"path": "https://s3-hpcrc.rc.princeton.edu/minnie65-phase3-em/unaligned"
}' \
--src_layer_spec '{
"name": "large_folds",
"type": "mask",
"path": "gs://seunglab_minnie_phase3/alignment/unaligned_fold_lengths/threshold_350"
}' \
--dst_folder "gs://corgie/demo/my_first_stack" \
--start_coord "150000, 150000, 17000" \
--end_coord "250000, 250000, 17020" \
--mip 6 \
--chunk_xy 1024 --chunk_z 1
Documentation
1 maintainer
Metadata
1 maintainer
Release files for corgie 0.1.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| corgie-0.1.1.tar.gz | 71.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| corgie-0.1.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 177.6 kB
Release files / corgie-0.1.1.tar.gz
| Download URL | corgie-0.1.1.tar.gz |
|---|---|
| Size | 71.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / corgie-0.1.1-py3-none-any.whl
| Download URL | corgie-0.1.1-py3-none-any.whl |
|---|---|
| Size | 106.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/4.0.0 CPython/3.9.13
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