corpora-py 0.1.3

Graph-based biblical and religious text study platform (all-in-one umbrella)

Corpora Platform — Python Backend

Graph-based biblical and religious text study platform — powered by Context-Fabric, Supabase, and FastMCP.

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What is this?

A Python backend for studying annotated religious texts (Bible, Quran, Tanakh, commentaries, lexicons). It exposes corpus data and conversion tooling through a combined FastAPI app:

Surface	Technology	Use case
MCP server (/mcp)	FastMCP	AI assistants (Claude, GPT, etc.)
Conversion API (/convert)	FastAPI + background jobs	Upload EPUB/HTML/PDF/TEI/plain-text documents and convert them to Text-Fabric/.corpus archives

Corpora are loaded from Context-Fabric — a graph-based annotated text engine. Every word, verse, chapter, and book is a typed node in a graph with queryable features (lemma, morphology, gloss, etc.).

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Workspace packages

This repo is a uv workspace of three published packages plus an umbrella:

PyPI package	Source	Purpose
corpora-common	packages/common/src/common/	Settings, logging, shared utilities
corpora-mcp	packages/mcp/src/corpora_mcp/	FastMCP server + cf-mcp CLI
corpora-admin	packages/admin/src/admin/	EPUB/HTML/PDF/TEI → Text-Fabric converters + conversion HTTP API
corpora-py	src/corpora_py/ (umbrella)	Installs all three + the combined FastAPI app (corpora-api CLI)

Module	Purpose
corpora_mcp.server	FastMCP server — 11 corpus tools for AI clients
corpora_mcp.corpus	CorpusManager — loads/holds Text-Fabric corpora at runtime
admin.parsers	Format parsers (EPUB/HTML/XML/TEI/PDF/plain) → shared schema
admin.converters	Parsed documents → Text-Fabric → .cfm → .corpus
admin.services	FastAPI router + job manager for POST/GET /convert
common.utils	Settings (pydantic-settings), logging, SSL/cert helpers
corpora_py.app	Combines the MCP server and admin conversion API into one FastAPI app

Note: earlier drafts of this README described shared.auth/shared.models/shared.schemas/shared.corpus (git-based dataset fetching, Supabase auth, Pydantic schemas). Those modules do not exist in the current common package (it currently only has common.utils) — they were either not carried over during the shared→common consolidation or are still on a roadmap. Don't rely on them until they reappear in packages/common/src/common/.

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Tech stack

• Python 3.13+ with uv for dependency management
• FastMCP 2 — MCP server for AI clients
• Context-Fabric (cfabric) — graph corpus engine (fork of Text-Fabric)

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Getting started

Prerequisites

• uv ≥ 0.9
• Python 3.13

Install (development)

git clone <repo-url>
cd corpora-py
uv run scripts/setup.py

Install a specific package

# MCP server only (lightweight)
pip install corpora-mcp

# Admin / conversion tools (includes text-fabric)
pip install corpora-admin

# Everything, including the combined FastAPI app (`corpora-api` CLI)
pip install corpora-py

Environment

cp .env.example .env.development
# Fill in PROJECT_REF, SUPABASE_SECRET_KEY, etc.

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Combined FastAPI app

corpora-api runs a single FastAPI app that serves both the MCP server and the admin conversion API from one process (src/corpora_py/app.py):

uv run corpora-api
# MCP:        http://127.0.0.1:8000/mcp
# Conversion: http://127.0.0.1:8000/convert
# Health:     http://127.0.0.1:8000/health

Uploading a document to /convert starts a background conversion job (parse → Text-Fabric → .cfm → .corpus) and returns immediately with a job id; poll GET /convert/{job_id} or open /convert/{job_id}/ws for status. See packages/admin/src/admin/services/api.py for the full endpoint list and why conversion is job-based rather than synchronous (large documents like a full Bible can take minutes and pin a CPU core).

Auth: every path except /health///docs requires a Supabase JWT — Authorization: Bearer <token> for HTTP, ?token=<token> for the WebSocket (browser/webview WebSocket clients can't set custom headers). Enforced by default (this runs as a locally-reachable sidecar, not just a dev tool); set AUTH_REQUIRED=false to disable for local development. See src/corpora_py/auth.py and the root CLAUDE.md's "Auth" section.

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MCP server

The MCP server lets AI assistants query corpora directly via the Model Context Protocol. It can run standalone (cf-mcp, below) or mounted inside the combined app (corpora-api, above) at /mcp.

Start the server

# stdio — for Claude Desktop and other MCP clients
uv run cf-mcp --corpus ~/.exegia/datasets/bibles/BHSA

# SSE on port 8000 — for remote / desktop app connections
uv run cf-mcp --corpus ~/.exegia/datasets/bibles/BHSA --sse 8000

# Multiple corpora at once
uv run cf-mcp \
  --corpus ~/.exegia/datasets/bibles/BHSA --name BHSA \
  --corpus ~/.exegia/datasets/bibles/GNT  --name GNT

Docker

# Build and run the MCP-only container (no admin/text-fabric weight)
docker build -f dockerfiles/Dockerfile.client -t corpora-mcp .
docker run -p 8000:8000 \
  -v ~/.exegia/datasets:/data/datasets:ro \
  corpora-mcp \
  cf-mcp --corpus /data/datasets/BHSA --name BHSA --sse 8000

# Or run the combined app (MCP + conversion API) via the umbrella image
docker build -f dockerfiles/Dockerfile -t corpora-py .
docker run -p 8000:8000 -v ~/.exegia/datasets:/data/datasets:ro corpora-py

# Or with Docker Compose (see dockerfiles/docker-compose.yml)
docker compose -f dockerfiles/docker-compose.yml up corpora

Available tools (11)

Category	Tool	Description
Discovery	list_corpora	List loaded corpora and the active one
Discovery	describe_corpus	Node types with counts, section hierarchy
Discovery	list_features	Browse features, filter by node type
Discovery	describe_feature	Metadata + top values by frequency
Discovery	get_text_formats	Available text encodings with samples
Search	search	Pattern search — results / count / statistics / passages
Search	search_continue	Paginate large result sets via cursor
Search	search_csv	Export results to a local CSV file
Search	search_syntax_guide	Inline query syntax documentation
Data	get_passages	Retrieve text by section reference
Data	get_node_features	Batch feature lookup for a list of nodes

Recommended workflow for AI agents

describe_corpus()           → understand what node types exist
list_features()             → see what annotations are available
search_syntax_guide()       → learn the query language
search(template, "count")   → check scale before fetching results
search(template, "results") → get paginated result set
get_passages(references)    → read the matched text

Programmatic use

from corpora_mcp import mcp
from corpora_mcp.corpus import corpus_manager

corpus_manager.load("~/.exegia/datasets/bibles/BHSA", name="BHSA")
mcp.run(transport="sse", host="localhost", port=8000)

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Corpus datasets

Datasets are Text-Fabric archives extracted locally under ~/.exegia/datasets/. There is currently no built-in git-fetch helper for datasets in this repo (an earlier draft of this README described one at shared.corpus, which no longer exists post-refactor) — datasets are expected to already be on disk when passed to CorpusManager.load() / cf-mcp --corpus.

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Importing books (EPUB / HTML / PDF / TEI / plain text)

Documents can be converted into Text-Fabric datasets (and packaged as .corpus archives) either via the HTTP API (POST /convert, see "Combined FastAPI app" above — the recommended path for large documents) or directly in Python:

pip install corpora-admin

from admin.converters import convert_epub_to_tf
from admin.converters.convert_to_corpus import convert_to_corpus

tf_dir = convert_epub_to_tf("commentary.epub", "~/.exegia/datasets/books/my-commentary/tf")
convert_to_corpus(tf_dir, "my-commentary.corpus", name="MyCommentary")

The converter produces this node hierarchy:

book
  chapter          (EPUB spine item / page)
    element        (block HTML element)
      paragraph    (paragraph-like elements)
        word       (slot — smallest unit)

The output directory is a valid TF dataset, loadable by the MCP server:

uv run cf-mcp --corpus ~/.exegia/datasets/books/my-commentary

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Development

Run tests

uv run pytest

Build wheels

# Individual workspace packages
uv build --package corpora-common --wheel --out-dir dist/
uv build --package corpora-mcp    --wheel --out-dir dist/
uv build --package corpora-admin  --wheel --out-dir dist/

# Bump version + publish to PyPI
uv run scripts/publish.py          # bump patch, commit, tag, push
uv run scripts/publish.py minor    # bump minor
uv run scripts/publish.py 1.2.3    # explicit version

Project layout

corpora-py/
├── pyproject.toml          # Workspace root + umbrella package (corpora-py), corpora-api/cf-mcp entry points
├── uv.lock
├── packages/
│   ├── common/             # corpora-common
│   │   └── src/common/     #   utils/ (settings, logging, SSL cert helpers)
│   ├── mcp/                # corpora-mcp
│   │   └── src/corpora_mcp/ #  FastMCP server (server.py), CorpusManager (corpus.py), cf-mcp entrypoint
│   └── admin/              # corpora-admin
│       └── src/admin/
│           ├── parsers/     #   source format → shared Document/Unit schema
│           ├── converters/  #   Document/Unit → Text-Fabric → .cfm → .corpus
│           └── services/    #   FastAPI router + WebSocket + job manager for /convert
├── src/
│   └── corpora_py/         # Umbrella module — combined FastAPI app (app.py) + corpora-api entrypoint
├── scripts/
│   ├── setup.py            # Install deps + dotenvx + example runtime
│   ├── clean.py            # Remove caches and build artifacts
│   ├── publish.py          # Bump version + build + publish helper
│   └── build/              # Sidecar/example Python bundling scripts
├── dockerfiles/
│   ├── Dockerfile          # Combined app image (MCP + conversion API), corpora-py
│   ├── Dockerfile.client   # MCP-only image, corpora-mcp
│   ├── Dockerfile.admin    # Admin/converter-only image, corpora-admin
│   └── docker-compose.yml
└── .github/
    └── workflows/            # test/build/publish/docker CI (see .github/workflows/*.yml)