Skip to main content

COVID-19 Modeling

Project description

COMODELS

Models for COVID - 19

For documentation, see the docstrings! Much more to come. For help:

import comodels
help(comodels)
help(comodels.PennDeath)
help(comodels.Penn)

Penn Death model

# import the penn model
import matplotlib.pyplot as plt
from comodels import PennDeath

help(PennDeath)
tx = PennDeath(N = 28304596, I = 223, R = 0, D = 3, D_today = 2)

help(PennDeath.sir)

def plot_penn(Pdp: PennDeath, n_days: int) -> None:
    # predict the coming storm and plot it
    curve, admissions = Pdp.sir(n_days)
    fig, ax = plt.subplots(1,3, figsize=(15,5))
    for k, v in curve.items():
        if k not in Pdp.rates.keys() :
            ax[0].plot(v, label=k)
            ax[0].legend()
        else:
            ax[1].plot(v, label=k)
            ax[1].legend()
    ax[1].set_title('Hospital Resource Usage')
    ax[0].set_title('SIR curve')
    for k, v in admissions.items():
        ax[2].plot(v, label = k)
        ax[2].legend()
    ax[2].set_title('Additional Resource Usage by day')
    fig.suptitle(f"No social distancing, total deaths = {int(max(curve['dead']))}")
    plt.show()


plot_penn(tx, 120)
print(curve.keys())
print(occupancy.keys())

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for covid-modeling, version 0.1.1
Filename, size File type Python version Upload date Hashes
Filename, size covid_modeling-0.1.1-py3-none-any.whl (6.9 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size covid-modeling-0.1.1.tar.gz (253.3 kB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page