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Project Status: Active – The project has reached a stable, usable state and is being actively developed. build Ruff Code style: black PyPI Latest Release

covvfit

Fitness estimates of SARS-CoV-2 variants from variant abundance data.

Installation and usage

Covvfit can be installed from the Python Package Index:

$ pip install covvfit

For an example how to analyze the data see this tutorial.

See Also

  • V-pipe: a bioinformatics pipeline for viral sequencing data.
  • cojac: command-line tools for the analysis of co-occurrence of mutations on amplicons.

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