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Calculate critical effect size values.

Project description

critical_es_value

Calculate critical effect size values for t-Tests, correlation tests and linear regression coefficients.

Installation

pip install critical-es-value

Overview

This package offers 8 main functions. Either provide the raw sample data to the main version of the function, or provide the summary statistics to the from_values() version.

Main version from_values()
critical_for_one_sample_ttest() critical_for_one_sample_ttest_from_values()
critical_for_two_sample_ttest() critical_for_two_sample_ttest_from_values()
critical_for_correlation_test() critical_for_correlation_test_from_values()
critical_for_linear_regression() critical_for_linear_regression_from_values()

Main Usage

import numpy as np
import pingouin as pg
import critical_es_value as cev

np.random.seed(123)
mean, cov, n = [4, 5], [(1, .6), (.6, 1)], 30
x, y = np.random.multivariate_normal(mean, cov, n).T

t-Test

pg.ttest(x, 0)
cev.critical_for_one_sample_ttest(x)
T dof alternative p-val CI95% cohen-d BF10 power
T-test 16.0765 29 two-sided 5.54732e-16 [3.37 4.35] 2.93515 1.031e+13 nan
T dof T_critical d d_critical b_critical g g_critical
critical 16.0765 29 2.04523 2.93515 0.373406 0.491162 2.85847 0.363651
pg.ttest(x, y, paired=False)
cev.critical_for_two_sample_ttest(x, y, paired=False)
T dof alternative p-val CI95% cohen-d BF10 power
T-test -3.40071 58 two-sided 0.0012224 [-1.68 -0.43] 0.878059 26.155 0.916807
T dof T_critical d d_critical b_critical g g_critical
critical -3.40071 58 2.00172 -0.878059 0.516841 0.62077 -0.866647 0.510124

Correlation Test

pg.corr(x, y)
cev.critical_for_correlation_test(x, y)
n r CI95% p-val BF10 power
pearson 30 0.594785 [0.3 0.79] 0.00052736 69.723 0.950373
n r dof r_critical se_r se_r_critical
critical 30 0.594785 28 0.361007 0.15192 0.176238

Linear Regression

import pandas as pd

np.random.seed(123)
data = pd.DataFrame({"X": x, "Y": y, "Z": np.random.normal(5, 1, 30)})

pg.linear_regression(data[["X", "Z"]], data["Y"])
cev.critical_for_linear_regression(data[["X", "Z"]], data["Y"])
names coef se T pval r2 adj_r2 CI[2.5%] CI[97.5%]
0 Intercept 3.15799 0.844129 3.74112 0.000874245 0.354522 0.306709 1.42598 4.88999
1 X 0.487772 0.126736 3.84871 0.000659501 0.354522 0.306709 0.22773 0.747814
2 Z -0.0249309 0.140417 -0.177548 0.860403 0.354522 0.306709 -0.313044 0.263182
names coef coef_critical
0 Intercept 3.15799 1.73201
1 X 0.487772 0.260042
2 Z -0.0249309 0.288113

Usage of from_values() version

t-Test

t_test_result = pg.ttest(x, 0).iloc[0]
cev.critical_for_one_sample_ttest_from_values(
    t=t_test_result["T"],
    n=len(x),
    dof=t_test_result.dof,
    std=np.std(x, ddof=1),
)
T dof T_critical d d_critical g g_critical b_critical
critical 16.0765 29 2.04523 2.93515 0.373406 2.85847 0.363651 0.491162
t_test_result = pg.ttest(x, y, paired=False).iloc[0]
cev.critical_for_two_sample_ttest_from_values(
    t=t_test_result["T"],
    n1=len(x),
    n2=len(y),
    dof=t_test_result.dof,
    paired=False,
    std1=np.std(x, ddof=1),
    std2=np.std(y, ddof=1),
)
T dof T_critical d d_critical g g_critical b_critical
critical -3.40071 58 2.00172 -0.878059 0.516841 -0.866647 0.510124 0.62077

Correlation Test

corr_test = pg.corr(x, y).iloc[0]
cev.critical_for_correlation_test_from_values(
    r=corr_test["r"],
    n=corr_test["n"],
    variant="ttest",
)
n r dof r_critical se_r se_r_critical
critical 30 0.594785 28 0.361007 0.15192 0.176238

Linear Regression

model = pg.linear_regression(data[["X", "Z"]], data["Y"])

cev.critical_for_linear_regression_from_values(
    coeffs=model["coef"].values,
    coeffs_se=model["se"].values,
    coeffs_names=model["names"].values,
    dof=model.df_resid_,
    variant="ttest",
)
names coef coef_critical
0 Intercept 3.15799 1.73201
1 X 0.487772 0.260042
2 Z -0.0249309 0.288113

Resources

Perugini, A., Gambarota, F., Toffalini, E., Lakens, D., Pastore, M., Finos, L., ... & Altoè, G. (2025). The Benefits of Reporting Critical-Effect-Size Values. Advances in Methods and Practices in Psychological Science, 8(2), 25152459251335298.

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