crpsconfreg 0.2.0

Optimal binning and conformal prediction for regression

Optimal Binning for Regression via LOO-CRPS

Research project extending the Venn-ABERS calibrated prediction framework to regression (continuous response, real-valued covariate).

Overview

Given training data $(x_i, y_i)$, we sort by $x$, partition the observations into $K$ contiguous bins, and use the within-bin empirical CDF as the predictive distribution. The three main contributions are:

1. Optimal binning: bin boundaries are chosen to minimise the total leave-one-out CRPS via dynamic programming in $O(n^2 K)$ time.
2. Cross-validated K selection: the number of bins $K$ is selected by test CRPS on a held-out split; within-sample LOO-CRPS is gameable and must not be used for model selection.
3. Conformal prediction: the bin ECDF is wrapped in a full conformal predictor (CRPS as nonconformity score) to obtain finite-sample coverage guarantees.

The Venn prediction band — the family of augmented ECDFs as the hypothetical label varies — is also formalised as the direct regression analog of the Venn-ABERS interval.

Package usage

import numpy as np
from crpsconfreg import BinningPredictor

# x and y must be sorted by x
pred = BinningPredictor().fit(x_train, y_train, K_max=20)  # CV selects K*

# Conformal prediction interval with coverage >= 1 - epsilon
lo, hi = pred.predict_interval(x_new, epsilon=0.10)

# Conformal p-value for an observed (x*, y*) pair
pvals = pred.conformal_pvalue(x_new, y_new)

# Within-bin empirical CDF
cdf = pred.predict_ecdf(x_new, t_grid)

print(f"K* = {pred.K_}, bin sizes = {pred.bin_sizes()}")

Pass K=k to fit() to fix the number of bins and bypass cross-validation.

Installation

uv sync
# or
pip install -e .

Repository structure

Path	Description
src/crpsconfreg/	Python package
src/crpsconfreg/binning.py	LOO-CRPS cost, DP, bin boundaries
src/crpsconfreg/selection.py	CRPS scoring, CV K selection
src/crpsconfreg/conformal.py	Conformal p-values (vectorised), prediction intervals
src/crpsconfreg/predictor.py	BinningPredictor high-level class
tests/	61 pytest tests
dp_formulation.tex / .pdf	Full write-up: derivations, CV K selection, Venn band, conformal prediction, numerical illustration
conformal_binning.ipynb	Clean notebook: CV K selection, Venn band, p-value curves, fan plot, coverage check
optimal_binning.ipynb	Original exploratory notebook (includes Bayesian regularisation exploration)
save_figures.py	Reproduces all figures in figures/ as PDFs
showcase.ipynb	Interactive notebook: edit one config cell to plug in any DGP
demo/app.py	Panel + Pyodide static web demo (Python in the browser)
demo-js/	TypeScript + Vite + Plotly.js web demo (instant load, no WASM)
docs/	Generated static site served by GitHub Pages

Key results

• LOO-CRPS cost of a bin $S$ with $m \ge 2$ observations: $\mathrm{cost}(S) = \frac{m}{(m-1)^2} \sum_{\ell < r} |y_\ell - y_r|$
• CV selects $K^*=3$ on the heteroscedastic example ($n=200$, $Y|X=x \sim \mathcal{N}(x,(1+x)^2)$), with bin sizes 51/60/89
• Empirical coverage at $\varepsilon=0.10$: 91.0% (target $\ge$ 90%) on a 2000-point test set

Interactive showcase

showcase.ipynb lets you plug in any data-generating process and immediately see the full pipeline — K selection, partition, predictive CDFs, conformal p-value curves, prediction bands, and empirical coverage. Edit only the configuration cell at the top:

def ygiven_x(x, rng):          # sample Y | X = x
    return rng.normal(loc=x, scale=0.5 + x)

def true_quantile(x, p):       # oracle p-quantile (or set to None)
    from scipy.stats import norm
    return norm.ppf(p, loc=x, scale=0.5 + x)

n_train, x_lo, x_hi = 300, 0.0, 3.0
K_max, epsilon, seed = 20, 0.10, 42

Three alternatives are included as comments: skewed (gamma), bimodal mixture, and sinusoidal mean.

Live demo

A static web demo runs entirely in the browser with no server and no Python runtime. It is built with TypeScript, Vite, and Plotly.js (demo-js/), giving instant page loads. Four DGP presets are included; you can also write a custom Data Generating Process in the editor. All plots from the notebook are reproduced.

Enable GitHub Pages (Settings → Pages → Source: docs/ on js-demo) to host it at https://ptocca.github.io/RegressionVenn/.

To rebuild docs/ after editing the demo source:

cd demo-js
npm install      # first time only
npm run build    # outputs to ../docs/

The earlier Panel + Pyodide demo (demo/app.py, branch master) is still available and can be rebuilt with bash demo/build.sh.

Running the tests

uv run pytest