cryoem-monitor

Electron Microscope Monitoring System using Prometheus with an Visualisation using Grafana Endpoint

from cryoem_monitor import __version__

print(f"Hello cryoem_monitor {__version__}")

Run FastAPI Server

Before you create the FastAPI server, export the path variable where the XML file from the EM is stored.

export ${PATH_VARIABLE}
fastapi run src/cryoem_monitor/server/prometheus.py

Run Diagnostic Data Collection

• XML_file_path is where you have HealthMonitor Data setup (It should be the same as the ${PATH_VARIABLE})
• Sever port is the link to the FastAPI prometheus server which is interfaced with

cryoem_monitor.run --path ${XML_file_path} --server ${server_port}

Export Base Grafana Template

• This creates a base Grafana Dashboard JSON file that can be imported containing all Parameters

cryoem_monitor.graf-export --device ${EM_device_name}