Deep learning automated segmentation models using high-level features from foundation ViT models.
Project description
CryoVIT: Efficient Segmentation of Cryo-electron Tomograms with Vision Foundation Models
Installation Instructions
CryoVIT uses Mamba to manage python packages and dependencies and can be downloaded here. You should also be able to use Conda instead of Mamba but setting up the environment may take an unreasonably long time.
- Clone the CryoVIT github repository:
git clone https://github.com/sanketx/CryoVIT.git - Setup the mamba environment:
mamba env create -f CryoVIT/env.yml - Activate the mamba environment:
mamba activate cryovit_env
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