Purpose: Extract Medical Concepts from Physician Notes
This package simplifies communication with cTAKES NLP servers which produce matches with UMLS Concepts.
Quickstart
Clinical text fragment or entire physician note.
physician_note = 'Chief Complaint: Patient c/o cough, denies fever, recent COVID test negative. Denies smoking.'
output = await ctakesclient.client.post(physician_note)
Note that ctakesclient uses an async API.
If your code is not async, you can simply wrap calls in asyncio.run():
output = asyncio.run(ctakesclient.client.post(physician_note))
Output
This client parses responses into lists of MatchText and UmlsConcept.
CtakesJSON(output)
list_match() -> List[MatchText]
list_concept() -> List[UmlsConcept]
list_sign_symptom() -> List[MatchText]
list_disease_disorder() -> List[MatchText]
list_medication() -> List[MatchText]
list_procedure() -> List[MatchText]
list_anatomical_site() -> List[MatchText]
MatchText: Physician Notes
MatchText(s) are the character positions in the physician note where a UmlsConcept was found.
MatchText: Polarity
UMLS Concept
UMLS Vocabulary
UMLS Semantic Types and Groups
You can browse the list of UMLS Semantic Types at the National Library of Medicine.
1 maintainer
Metadata
1 maintainer
Release files for ctakesclient 5.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| ctakesclient-5.1.0.tar.gz | 92.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| ctakesclient-5.1.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 115.4 kB
Release files / ctakesclient-5.1.0.tar.gz
| Download URL | ctakesclient-5.1.0.tar.gz |
|---|---|
| Size | 92.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/4.0.2 CPython/3.11.5
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Release files / ctakesclient-5.1.0-py3-none-any.whl
| Download URL | ctakesclient-5.1.0-py3-none-any.whl |
|---|---|
| Size | 22.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.5
|
