cukks-cu124 0.2.2

CKKS Homomorphic Encryption backend with CUDA 12.4 GPU acceleration

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CuKKS

GPU-accelerated CKKS Homomorphic Encryption for PyTorch

Run trained PyTorch models on encrypted data — no decryption needed, no privacy compromised.
Built on OpenFHE with CUDA acceleration.

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Why CuKKS?

Traditional machine learning requires access to raw input data — a privacy risk for sensitive domains like healthcare, finance, and biometrics. CuKKS lets you deploy models that never see plaintext:

User: encrypt(input) → [ciphertext] → Server: model([ciphertext]) → [encrypted output] → User: decrypt

The server performs full inference without ever decrypting the data. CuKKS makes this practical with:

• One-line conversion — cukks.convert(model) transforms any trained PyTorch model
• GPU acceleration — CUDA-accelerated HE operations via OpenFHE
• 37 layer types — from Linear and Conv2d to Attention, GroupNorm, and ConvTranspose2d

Quick Start

import torch.nn as nn
import cukks

# 1. Train your model normally
model = nn.Sequential(nn.Linear(784, 128), nn.ReLU(), nn.Linear(128, 10))

# 2. Convert to encrypted model
enc_model, ctx = cukks.convert(model)

# 3. Run encrypted inference
enc_input = ctx.encrypt(test_input)
enc_output = enc_model(enc_input)
output = ctx.decrypt(enc_output)  # Same result, never decrypted on server

Installation

pip install cukks[cu121]  # Match your PyTorch CUDA version: cu118, cu121, cu124, cu128

Command	CUDA	Compute Capability
pip install cukks[cu118]	11.8	sm_50 – sm_90 (Maxwell ~ Hopper)
pip install cukks[cu121]	12.1	sm_50 – sm_90 (Maxwell ~ Hopper)
pip install cukks[cu124]	12.4	sm_50 – sm_90a (Maxwell ~ Hopper)
pip install cukks[cu128]	12.8	sm_50 – sm_100 (Maxwell ~ Blackwell)

Not sure which CUDA version? Run python -c "import torch; print(torch.version.cuda)".

Docker, CLI tools, and building from source

Docker

docker run --gpus all -it pytorch/pytorch:2.2.0-cuda12.1-cudnn8-runtime bash
pip install cukks[cu121]

Auto-install CLI

pip install cukks
cukks-install-backend  # Auto-detects PyTorch CUDA and installs matching backend

Build from source

git clone https://github.com/devUuung/CuKKS.git && cd CuKKS
pip install -e .

# Build OpenFHE backend
cd openfhe-gpu-public && mkdir build && cd build
cmake .. -DWITH_CUDA=ON && make -j$(nproc)

cd ../../bindings/openfhe_backend
pip install -e .

Key Features

Drop-in Model Conversion

No model rewriting. No custom HE code. Just call cukks.convert(model):

# Any PyTorch model — MLP, CNN, Transformer — converts automatically
enc_model, ctx = cukks.convert(model, activation_degree=4)

BatchNorm folding, BSGS matrix multiplication, and CNN optimizations are applied automatically.

37 Supported Layer Types

Category	Layers
Linear	Linear, BlockDiagonalLinear, BlockDiagLowRankLinear
Convolution	Conv1d, Conv2d, ConvTranspose2d
Pooling	AvgPool2d, MaxPool2d, AdaptiveAvgPool2d
Normalization	LayerNorm, GroupNorm, InstanceNorm1d/2d, BatchNorm (folded)
Activation	ReLU, GELU, SiLU, Sigmoid, Tanh, Square
Attention	MultiheadAttention (seq_len ≤ 8)
Embedding	Embedding
Spatial	Upsample, PixelShuffle, PixelUnshuffle
Padding	ZeroPad2d, ConstantPad2d, ReflectionPad2d, ReplicationPad2d
Other	Flatten, Dropout, Sequential, ResidualBlock

Full layer table →

GPU-Accelerated HE Operations

All core HE operations run on GPU:

Operation	GPU
Add / Sub / Mul / Square	✅
Rotate / Rescale	✅
Bootstrap	✅
Plaintext cache	✅

Polynomial Activation Approximation

CKKS only supports polynomial operations. CuKKS approximates non-polynomial activations (ReLU, GELU, SiLU, etc.) using Chebyshev polynomial fitting:

# Default: degree-4 (good accuracy / depth balance)
enc_model, ctx = cukks.convert(model)

# Higher degree for better accuracy (costs more depth)
enc_model, ctx = cukks.convert(model, activation_degree=8)

Packed Batch Inference

Process multiple samples in a single ciphertext:

samples = [torch.randn(784) for _ in range(8)]
enc_batch = ctx.encrypt_batch(samples)
enc_output = enc_model(enc_batch)
outputs = ctx.decrypt_batch(enc_output, sample_shape=(8,))

Examples

# MNIST classification (MLP)
python examples/mnist_encrypted.py --hidden 64 --samples 5

# UNet-style segmentation (ConvTranspose2d, AdaptiveAvgPool2d, Upsample)
python examples/unet_encrypted.py --samples 2

# ResNet-style classification (GroupNorm, AdaptiveAvgPool2d)
python examples/resnet_encrypted.py --samples 1

# Transformer-style NLP (Embedding, LayerNorm)
python examples/transformer_encrypted.py --samples 2

See examples/ for full scripts.

Benchmarking

CuKKS includes a benchmark suite for measuring encrypted inference performance:

# Run all benchmarks
python benchmarks/run_benchmarks.py

# Benchmark a specific model
python benchmarks/run_benchmarks.py --model mlp

# Save results to JSON
python benchmarks/run_benchmarks.py --output results.json

Supported models:

Model	Params	Input	Architecture
MLP	50,890	(1, 784)	Linear(784→64) → ReLU → Linear(64→10)
CNN	15,770	(1, 1, 28, 28)	Conv2d(1→8, 3×3) → ReLU → AvgPool2d(2) → Linear(1568→10)
ResNet	1,300	(1, 1, 8, 8)	Conv2d(1→8, 3×3) → GroupNorm → ReLU → Conv2d(8→16, 1×1) → GroupNorm → ReLU → AdaptiveAvgPool2d(4×4) → Linear(256→4)
Transformer	212	(1, 8)	Linear(8→16) → ReLU → Linear(16→4)

Example output:

Model           Plain (ms)   Encrypted (ms)  Overhead   MAE       
--------------------------------------------------------------
mlp             0.01         84.16           6858      x 0.075594
cnn             0.03         2820.15         94053     x 0.048294
resnet          0.04         11444.55        269018    x 0.098026
transformer     0.01         54.27           7794      x 0.087978

Note: Benchmarks require a GPU backend with OpenFHE. Run on a machine with CUDA support for accurate timing.

Supported Layers

PyTorch Layer	Encrypted Version	Notes
nn.Linear	EncryptedLinear	BSGS optimization
nn.Conv1d	EncryptedConv1d	1D im2col
nn.Conv2d	EncryptedConv2d	im2col, BSGS
nn.ConvTranspose2d	EncryptedConvTranspose2d	Transposed convolution
nn.ReLU	EncryptedReLU	Polynomial approx
nn.GELU	EncryptedGELU	Polynomial approx
nn.SiLU	EncryptedSiLU	Polynomial approx
nn.Sigmoid	EncryptedSigmoid	Polynomial approx
nn.Tanh	EncryptedTanh	Polynomial approx
nn.AvgPool2d	EncryptedAvgPool2d	Rotation-based
nn.MaxPool2d	EncryptedMaxPool2d	Polynomial approx
nn.AdaptiveAvgPool2d	EncryptedAdaptiveAvgPool2d	Global-pool fast path
nn.Flatten	EncryptedFlatten	Logical reshape
nn.BatchNorm1d/2d	Folded	Merged into preceding layer
nn.GroupNorm	EncryptedGroupNorm	Per-group polynomial
nn.InstanceNorm1d/2d	EncryptedInstanceNorm1d/2d	Per-channel polynomial
nn.LayerNorm	EncryptedLayerNorm	Polynomial 1/sqrt
nn.MultiheadAttention	EncryptedApproxAttention	seq_len ≤ 8
nn.Embedding	EncryptedEmbedding	One-hot matmul
nn.Upsample	EncryptedUpsample	Nearest / bilinear
nn.PixelShuffle	EncryptedPixelShuffle	Channel-to-spatial
nn.PixelUnshuffle	EncryptedPixelUnshuffle	Spatial-to-channel
nn.ZeroPad2d	EncryptedZeroPad2d	Scatter matrix
nn.ConstantPad2d	EncryptedConstantPad2d	Scatter + constant
nn.ReflectionPad2d	EncryptedReflectionPad2d	Reflection mapping
nn.ReplicationPad2d	EncryptedReplicationPad2d	Replication mapping
nn.Sequential	EncryptedSequential	Full support
nn.Dropout	EncryptedDropout	No-op during inference
nn.ResidualBlock	EncryptedResidualBlock	Skip connection

Documentation

• API Reference
• CKKS Concepts
• GPU Acceleration Guide
• STIP Packed Attention
• Examples Overview
• 한국어 문서

License

Apache License 2.0

Citation

@software{cukks,
  title = {CuKKS: PyTorch-compatible Encrypted Deep Learning},
  year = {2024},
  url = {https://github.com/devUuung/CuKKS}
}

Related

Libraries

• OpenFHE — Underlying HE library
• Microsoft SEAL — Alternative HE library

Papers

• Homomorphic Encryption for Arithmetic of Approximate Numbers — Cheon et al. (CKKS)
• Bootstrapping for Approximate Homomorphic Encryption — Cheon et al.
• Faster Homomorphic Linear Transformations in HElib — Halevi & Shoup (BSGS)
• GAZELLE: A Low Latency Framework for Secure Neural Network Inference — Juvekar et al. (Convolution)
• PP-STAT: An Efficient Privacy-Preserving Statistical Analysis Framework using Homomorphic Encryption — Choi (Encrypted Statistics)
• STIP: Efficient and Secure Non-Interactive Transformer Inference via Compact Packing — Wang et al. (Packed Attention)
• Efficient Bootstrapping for Approximate Homomorphic Encryption — Bossuat et al. (Double-Hoisting)
• On the Number of Nonscalar Multiplications Necessary to Evaluate Polynomials — Paterson & Stockmeyer (Polynomial Evaluation)