Catalog hierarchies for Dx, Rx, Labs, and other FHIR resource types
Project description
cumulus-library-catalog
Browsable hierarchies of pre-calculated counts for various coding systems. Part of the SMART on FHIR Cumulus Project
For more information, browse the Cumulus Library documentation.
Installing
You can install this study with pip install cumulus-library-catalog
Usage
As a prerequisite, you will need to have run the core study that ships with Cumulus Library, as well as the
UMLS Study
to get information about various coding systems.
After this, you build this study the same way as any other Cumulus study, with
cumulus-library build -t catalog, along with any additional arguments about your target database.
Citations
Bodenreider O. The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D267-70. doi: 10.1093/nar/gkh061. PubMed PMID: 14681409; PubMed Central PMCID: PMC308795.
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